Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS08500	HSERO_RS08505	HSERO_RS08510	HSERO_RS08515	HSERO_RS08520
micoeukaryotes	C.elegans, mixed culture-1	+0.3	-0.4	+0.2	-5.4	+0.2
micoeukaryotes	C.elegans, mixed culture-2	+0.0	-0.1	-0.3	-3.8	-0.1
micoeukaryotes	Acanthamoeba sp., muxed culture-1	+0.0	+0.0	+0.3	-4.1	-0.4
nitrogen fixation	D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days	+0.1	+0.1	-0.1	-3.0	-0.0
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-0.1	+0.1	+0.1	-2.9	+0.2
carbon source	L-Rhamnose (C)	-0.3	-0.2	-0.0	-1.8	-0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.1	+0.1	-2.6	-0.2
nitrogen fixation	L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days	+0.0	-0.0	-0.0	-2.4	+0.1
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.1	-0.1	+0.0	-2.8	+0.4
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	+0.1	+0.1	-0.1	-2.4	+0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.3	-0.5	-0.1	-1.7	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.2	-0.1	-2.1	-0.3
carbon source	D-Mannose (C)	+0.3	-0.1	+0.1	-1.8	-0.5
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-0.2	+0.3	-1.7	-0.2
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.3	+0.2	-0.1	-1.8	+0.0
stress	Cobalt chloride 0.2 mM	+0.4	-0.2	-0.1	-1.5	-0.6
vitamin	With vitamins t2	+0.1	+0.1	+0.2	-2.1	-0.0
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.3	-0.1	+0.3	-1.6	-0.1
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	+0.1	+0.1	-0.2	-1.9	+0.2
stress	nitrite 20 mM	-0.3	+0.0	+0.3	-1.7	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.2	-0.0	-2.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	-0.1	-0.4	-1.0	-0.4
carbon source	D-Galactose (C)	+0.4	+0.3	+0.3	-1.9	-0.4
carbon source	L-Fucose (C)	-0.3	+0.0	+0.3	-1.4	+0.3
carbon source	D-Galactose (C)	+0.0	+0.3	+0.4	-1.1	-0.6
supernatant control	Vogels_fungal_media; pH 5.5	-0.1	+0.5	+0.2	-1.4	-0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.3	-0.1	+0.4	-1.7	+0.8
carbon source	L-Asparagine (C)	+0.3	+0.1	+0.3	-1.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.0	+0.1	-1.3	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-0.1	-0.3	+2.0	-0.6