Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS08460 and HSERO_RS08465 are separated by 11 nucleotidesHSERO_RS08465 and HSERO_RS08470 are separated by 7 nucleotidesHSERO_RS08470 and HSERO_RS08475 overlap by 4 nucleotidesHSERO_RS08475 and HSERO_RS08480 overlap by 4 nucleotides HSERO_RS08460: HSERO_RS08460 - chemotaxis protein CheY, at 1,926,122 to 1,927,183 _RS08460 HSERO_RS08465: HSERO_RS08465 - hypothetical protein, at 1,927,195 to 1,927,812 _RS08465 HSERO_RS08470: HSERO_RS08470 - chemotaxis protein, at 1,927,820 to 1,928,662 _RS08470 HSERO_RS08475: HSERO_RS08475 - chemotaxis protein CheY, at 1,928,659 to 1,929,030 _RS08475 HSERO_RS08480: HSERO_RS08480 - chemotaxis protein CheA, at 1,929,027 to 1,931,540 _RS08480
Group Condition HSERO_RS08460 HSERO_RS08465 HSERO_RS08470 HSERO_RS08475 HSERO_RS08480
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.3 -0.4 -0.7 -0.3
carbon source L-Rhamnose (C) +0.1 -0.8 -0.4 -0.2 -0.1
carbon source L-mannose (C) -0.2 -0.5 +0.1 -0.7 -0.0
carbon source L-Rhamnose (C) -0.0 -0.4 +0.1 -1.0 +0.1
carbon source D-Galactose (C) -0.2 -0.6 +0.3 -0.7 +0.1
plant Control soil assay; outgrowth in LB -0.5 -0.5 +0.3 -0.4 +0.0
carbon source D-Xylose (C) -0.3 -0.6 +0.4 -0.2 -0.0
carbon source L-Fucose (C) -0.1 -0.3 +0.4 -0.8 +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2 -0.8 +0.1 +0.6 -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2 -0.3 +0.7 -0.7 -0.0
stress sodium fluoride 100 mM -0.2 +0.4 +0.1 -0.7 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.1 +0.6 -0.2 -0.7 -0.0
carbon source Carbon source D-Glucose 20 mM +0.2 +0.2 +0.4 -0.9 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.6 +0.4 -0.7 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.4 -0.3 -0.6 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.5 -0.3 +0.6 +0.2
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.1 +0.4 +0.4 -0.8 +0.1
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.1 +0.4 +0.3 -0.5 +0.2
carbon source D-Glucose (C) -0.3 +0.3 -0.3 +0.6 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 +0.4 -0.5 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +0.1 +1.0 -0.6 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.7 +0.1 -0.6 +0.0
control NoPredeControl +0.4 -0.1 +0.6 -0.3 -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.1 +0.6 +0.8 -0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.2 -0.3 +0.6 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 -0.2 -0.2 +1.4 -0.0
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM +0.0 +0.6 +0.5 -0.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.0 +1.6 -0.2 +0.6 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.0 -0.0 +2.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +2.7 +0.2 +0.4 -0.1
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