Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS08265 and HSERO_RS08270 are separated by 433 nucleotidesHSERO_RS08270 and HSERO_RS08275 are separated by 98 nucleotidesHSERO_RS08275 and HSERO_RS08280 are separated by 52 nucleotidesHSERO_RS08280 and HSERO_RS08285 overlap by 4 nucleotides HSERO_RS08265: HSERO_RS08265 - hypothetical protein, at 1,882,407 to 1,883,201 _RS08265 HSERO_RS08270: HSERO_RS08270 - amino acid ABC transporter substrate-binding protein, at 1,883,635 to 1,884,756 _RS08270 HSERO_RS08275: HSERO_RS08275 - branched-chain amino acid transporter permease subunit LivH, at 1,884,855 to 1,885,781 _RS08275 HSERO_RS08280: HSERO_RS08280 - leucine/isoleucine/valine transporter permease subunit, at 1,885,834 to 1,887,060 _RS08280 HSERO_RS08285: HSERO_RS08285 - amino acid ABC transporter ATP-binding protein, at 1,887,057 to 1,887,833 _RS08285
Group Condition HSERO_RS08265 HSERO_RS08270 HSERO_RS08275 HSERO_RS08280 HSERO_RS08285
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -1.2 -1.5 -1.3 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 -1.1 -1.3 -1.1 -1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 -1.3 -1.1 -1.0 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -0.9 -1.2 -0.9 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -1.0 -1.4 -0.7 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.0 -1.4 -0.6 -1.2 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -0.9 -1.3 -0.9 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.9 -1.4 -0.8 -1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.9 -0.6 -1.2 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -1.4 -0.9 -0.9 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.9 -0.7 -0.5 -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -1.1 -0.3 -0.7 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -1.0 -1.0 -0.7 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.7 -0.8 -1.1 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -1.2 -1.0 -0.8 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 -0.9 -1.1 -1.0 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.9 -0.9 -0.7 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -0.9 -0.5 -0.9 -0.8
carbon source Xylitol (C) -0.3 -0.8 -1.2 -1.0 -0.0
carbon source D-Glucose-6-Phosphate (C) -0.5 -0.6 -0.7 -0.7 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.9 -1.0 -0.6 -0.6
carbon source L-Proline (C) +0.2 -0.8 -0.9 -1.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 -0.8 -1.4 -0.8 +0.1
carbon source D-Lactate (C) -0.6 -0.8 -1.0 -0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 -0.6 -1.0 -0.6 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 -0.3 -0.9 -0.6 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 -0.7 -1.0 -0.7 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 -0.8 +0.6 -0.9 -0.9
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.5 +0.8 +0.6 +0.7 +0.8
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.1 +1.0 +0.9 +1.0 +0.4
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