Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS08230 and HSERO_RS08235 are separated by 1 nucleotidesHSERO_RS08235 and HSERO_RS08240 are separated by 9 nucleotidesHSERO_RS08240 and HSERO_RS08245 overlap by 4 nucleotidesHSERO_RS08245 and HSERO_RS08250 are separated by 77 nucleotides HSERO_RS08230: HSERO_RS08230 - sulfate/thiosulfate transporter subunit, at 1,876,303 to 1,877,193 _RS08230 HSERO_RS08235: HSERO_RS08235 - sulfate ABC transporter permease, at 1,877,195 to 1,878,094 _RS08235 HSERO_RS08240: HSERO_RS08240 - sulfate ABC transporter ATP-binding protein, at 1,878,104 to 1,879,183 _RS08240 HSERO_RS08245: HSERO_RS08245 - CysB family transcriptional regulator, at 1,879,180 to 1,880,115 _RS08245 HSERO_RS08250: HSERO_RS08250 - hypothetical protein, at 1,880,193 to 1,880,375 _RS08250
Group Condition HSERO_RS08230 HSERO_RS08235 HSERO_RS08240 HSERO_RS08245 HSERO_RS08250
carbon source D-Glucose (C) -1.0 +0.3 -0.4 -0.0 +0.2
stress Cisplatin 0.003 mg/ml -0.6 -0.2 +0.1 +0.3 -0.6
plant Control soil assay; outgrowth in LB +0.2 -0.4 +0.0 -0.7 -0.2
carbon source Glycerol (C) -0.2 -0.1 +0.2 +0.1 -0.9
stress nitrite 20 mM -0.4 -0.8 +0.0 +0.2 +0.1
nitrogen source L-Proline (N) -0.1 -0.4 +0.1 +0.3 -0.5
stress nitrate 200 mM -0.2 -0.3 +0.4 -0.4 -0.2
carbon source Carbon source Deoxyribonucleic from herring sperm 5 mg/mL +0.2 -0.0 -0.4 -0.6 +0.3
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.4 +0.6 -0.2 -0.1 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 +0.3 +0.1 -0.2 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.4 +0.3 -0.3 +0.5 -0.4
stress A22 0.02 mg/ml -0.1 -0.1 +0.3 +0.3 -0.5
supernatant control Vogels_fungal_media; pH 5.5 +0.0 -0.3 +0.0 +0.7 -0.5
carbon source D-Ribose (C) +0.0 +0.2 -0.4 +0.5 -0.3
carbon source D-Glucose (C) +0.4 -0.2 +0.3 -0.3 -0.2
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.1 +0.5 +0.3 -0.3 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.2 +1.1 -0.5 -0.2
vitamin With vitamins t2 +0.3 -0.4 +0.6 -0.1 +0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 -0.1 +0.6 +0.0 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.3 -0.1 +0.3 -0.3
vitamin No vitamins t1 +0.6 -0.3 +0.2 -0.0 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +0.2 +0.2 -0.3 +0.3
vitamin No vitamins t2 +1.0 -0.4 +0.2 +0.0 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.5 -0.1 -0.3 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 -0.4 +0.8 +0.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 -0.0 +0.1 +0.3 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.4 +0.0 +0.7 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +0.5 +0.7 -0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 +0.3 +0.3 +0.8 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +0.4 +0.5 +0.3 +0.3
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