Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS07800 and HSERO_RS07805 are separated by 176 nucleotidesHSERO_RS07805 and HSERO_RS07810 are separated by 63 nucleotidesHSERO_RS07810 and HSERO_RS07815 are separated by 103 nucleotidesHSERO_RS07815 and HSERO_RS07820 are separated by 15 nucleotides HSERO_RS07800: HSERO_RS07800 - transcriptional regulator, at 1,784,771 to 1,785,205 _RS07800 HSERO_RS07805: HSERO_RS07805 - glyoxalase, at 1,785,382 to 1,785,927 _RS07805 HSERO_RS07810: HSERO_RS07810 - FAD-dependent oxidoreductase, at 1,785,991 to 1,787,634 _RS07810 HSERO_RS07815: HSERO_RS07815 - hypothetical protein, at 1,787,738 to 1,787,968 _RS07815 HSERO_RS07820: HSERO_RS07820 - chemotaxis protein CheY, at 1,787,984 to 1,788,385 _RS07820
Group Condition HSERO_RS07800 HSERO_RS07805 HSERO_RS07810 HSERO_RS07815 HSERO_RS07820
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -1.0 -0.3 -0.4 N.D. -1.1
control NoPredeControl -1.5 -0.0 +0.0 N.D. -0.6
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -0.9 -0.0 -0.1 N.D. -0.7
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.4 -0.1 -0.2 N.D. -1.0
micoeukaryotes Acanthamoeba sp., muxed culture-2 -1.5 +0.0 -0.0 N.D. -0.1
stress Sisomicin 0.125 mg/ml -1.7 +0.0 +0.4 N.D. -0.2
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.5 -0.1 -0.1 N.D. -0.7
carbon source D-Glucose-6-Phosphate (C) -0.9 +0.0 +0.2 N.D. -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -1.0 -0.3 +0.3 N.D. +0.1
micoeukaryotes C.elegans, mixed culture-1 -0.7 -0.4 +0.1 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.7 +0.1 -0.4 N.D. +0.2
carbon source Glycerol (C) -0.8 +0.3 +0.1 N.D. -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 -0.1 -0.2 N.D. +0.4
carbon source D-Glucose (C) +0.7 -0.2 -0.2 N.D. -0.6
carbon source D-Galactose (C) +0.5 -0.3 +0.2 N.D. -0.5
control NoPredeControl +0.5 -0.1 +0.2 N.D. -0.5
carbon source D-Lactate (C) +0.7 +0.2 -0.2 N.D. -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 +0.2 +0.3 N.D. +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 -0.1 +0.1 N.D. -0.5
carbon source D-Galactose (C) +0.5 -0.2 -0.3 N.D. +0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2 -0.4 +0.0 N.D. +1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 +0.0 +0.1 N.D. +1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.4 +0.3 N.D. +0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.8 -0.3 +0.2 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 -0.0 -0.1 N.D. +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.1 +0.2 N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.2 +0.3 N.D. +0.6
carbon source Xylitol (C) +0.7 +0.2 +0.0 N.D. +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.1 +0.0 +0.4 N.D. +1.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.6 +0.0 +0.1 N.D. +0.7
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