Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS07750 and HSERO_RS07755 are separated by 128 nucleotidesHSERO_RS07755 and HSERO_RS07760 are separated by 36 nucleotidesHSERO_RS07760 and HSERO_RS07765 are separated by 39 nucleotidesHSERO_RS07765 and HSERO_RS07770 are separated by 387 nucleotides HSERO_RS07750: HSERO_RS07750 - tRNA-His, at 1,775,867 to 1,775,942 _RS07750 HSERO_RS07755: HSERO_RS07755 - glutamate racemase, at 1,776,071 to 1,776,964 _RS07755 HSERO_RS07760: HSERO_RS07760 - fumarate hydratase, at 1,777,001 to 1,778,542 _RS07760 HSERO_RS07765: HSERO_RS07765 - membrane protein, at 1,778,582 to 1,779,223 _RS07765 HSERO_RS07770: HSERO_RS07770 - acetyl-CoA synthetase, at 1,779,611 to 1,781,593 _RS07770
Group Condition HSERO_RS07750 HSERO_RS07755 HSERO_RS07760 HSERO_RS07765 HSERO_RS07770
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days N.D. -5.1 N.D. -0.0 -4.0
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. -4.6 N.D. -0.4 -3.9
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days N.D. -4.7 N.D. -0.1 -3.5
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -7.4 N.D. -0.4 -0.4
carbon source L-Malic (C) N.D. -7.0 N.D. -0.4 -0.1
carbon source L-Arabinose (C) N.D. -6.3 N.D. -0.7 -0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -6.4 N.D. +0.2 -0.8
supernatant control Vogels_fungal_media 0.1X N.D. -6.0 N.D. +0.3 -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -4.7 N.D. -0.4 -0.7
vitamin No vitamins t2 N.D. -5.0 N.D. -0.3 -0.4
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. -2.3 N.D. -0.1 -3.2
supernatant control Vogels_fungal_media 0.1X N.D. -5.0 N.D. -0.1 -0.2
carbon source L-Fucose (C) N.D. -5.0 N.D. -0.0 -0.2
vitamin With vitamins t2 N.D. -4.8 N.D. +0.1 -0.5
carbon source succinate (C) N.D. -4.8 N.D. -0.2 +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -4.6 N.D. +0.2 -0.4
carbon source L-Malic (C) N.D. -4.7 N.D. -0.0 -0.0
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. -5.5 N.D. -0.3 +1.0
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -3.7 N.D. -0.5 -0.6
carbon source D-Galactose (C) N.D. -4.1 N.D. -0.4 -0.0
carbon source D-Galacturonic Acid (C) N.D. -4.2 N.D. -0.1 -0.1
carbon source succinate (C) N.D. -3.9 N.D. -0.3 -0.1
carbon source D-Galactose (C) N.D. -3.6 N.D. -0.5 -0.1
stress Thallium(I) acetate 0.001 mg/ml N.D. -3.8 N.D. -0.4 +0.1
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days N.D. -4.0 N.D. -0.5 +0.6
carbon source D-Galacturonic Acid (C) N.D. -3.5 N.D. -0.3 -0.0
carbon source D-Sorbitol (C) N.D. -3.5 N.D. -0.4 +0.1
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. -4.4 N.D. -0.2 +1.1
stress Cisplatin 0.003 mg/ml N.D. -3.6 N.D. -0.0 +0.3
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days N.D. -3.4 N.D. -0.1 +0.6
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