Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS07675 and HSERO_RS07680 are separated by 38 nucleotidesHSERO_RS07680 and HSERO_RS07685 are separated by 258 nucleotidesHSERO_RS07685 and HSERO_RS07695 are separated by 1621 nucleotidesHSERO_RS07695 and HSERO_RS07700 overlap by 4 nucleotides HSERO_RS07675: HSERO_RS07675 - multidrug DMT transporter, at 1,755,083 to 1,755,991 _RS07675 HSERO_RS07680: HSERO_RS07680 - magnesium transporter CorA, at 1,756,030 to 1,757,016 _RS07680 HSERO_RS07685: HSERO_RS07685 - membrane protein, at 1,757,275 to 1,759,392 _RS07685 HSERO_RS07695: HSERO_RS07695 - ABC transporter permease, at 1,761,014 to 1,761,988 _RS07695 HSERO_RS07700: HSERO_RS07700 - ABC transporter permease, at 1,761,985 to 1,762,821 _RS07700
Group Condition HSERO_RS07675 HSERO_RS07680 HSERO_RS07685 HSERO_RS07695 HSERO_RS07700
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.7 -0.0 +0.3 -0.7 -0.7
plant Control soil assay; outgrowth in LB +0.2 +0.3 -0.3 -0.9 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.5 +0.1 +0.6 -0.9
carbon source D-Galactose (C) +0.5 -0.2 +0.1 -0.3 -0.8
stress Cobalt chloride 0.2 mM -0.7 +0.6 +0.3 -0.1 -0.5
stress sodium fluoride 100 mM -0.8 -0.1 +0.1 -0.7 +1.0
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.7 -0.1 +0.1 -0.6 -0.6
carbon source L-Fucose (C) -0.5 +0.3 +0.0 -0.7 +0.4
micoeukaryotes C.elegans, mixed culture-1 +0.4 +0.3 +0.1 -0.1 -0.9
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.7 -0.1 +0.0 +0.1 -1.0
carbon source D-Glucose (C) -0.7 +0.0 +0.4 -0.4 +0.4
carbon source L-Arabinose (C) +0.4 +0.4 +0.3 -0.0 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 -0.5 +0.1 +0.2 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 -0.3 +0.1 +0.6 -0.6
carbon source L-Fucose (C) +0.7 +0.3 -0.0 -0.5 -0.4
stress Nickel (II) chloride 0.6 mM -0.6 +0.3 +0.1 -0.2 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +1.0 +0.1 -0.0 -0.2
carbon source succinate (C) +0.7 +0.0 +0.3 -0.3 -0.4
stress Lomefloxacin 0.012 mM -0.7 +0.3 -0.2 +0.5 +0.4
stress Sisomicin 0.125 mg/ml -0.3 +0.3 -0.3 +0.1 +0.9
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +1.1 -0.0 -0.1 +0.1 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -0.4 +0.2 +0.7 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 +1.0 -0.1 +0.2 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.3 -0.3 +0.2 +0.6 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +0.1 +0.4 -0.3 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.8 -0.5 +0.0 +0.4 +0.5
agar plate interaction control Taped volatile agar plate with no fungus +0.8 +0.0 +0.5 -0.3 +0.3
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days +0.6 +0.3 +0.1 -0.2 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +0.2 +0.0 +1.6 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.8 +0.5 -0.3 +0.3 -0.3
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