Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS07100 and HSERO_RS07105 are separated by 170 nucleotidesHSERO_RS07105 and HSERO_RS07110 are separated by 344 nucleotidesHSERO_RS07110 and HSERO_RS07115 are separated by 200 nucleotidesHSERO_RS07115 and HSERO_RS07120 overlap by 4 nucleotides HSERO_RS07100: HSERO_RS07100 - ABC transporter substrate-binding protein, at 1,616,747 to 1,617,844 _RS07100 HSERO_RS07105: HSERO_RS07105 - allophanate hydrolase, at 1,618,015 to 1,619,793 _RS07105 HSERO_RS07110: HSERO_RS07110 - 16S rRNA methyltransferase, at 1,620,138 to 1,620,863 _RS07110 HSERO_RS07115: HSERO_RS07115 - transketolase, at 1,621,064 to 1,623,058 _RS07115 HSERO_RS07120: HSERO_RS07120 - acetyltransferase, at 1,623,055 to 1,623,600 _RS07120
Group Condition HSERO_RS07100 HSERO_RS07105 HSERO_RS07110 HSERO_RS07115 HSERO_RS07120
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2 -0.5 -1.3 N.D. N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.2 -0.0 -1.2 N.D. N.D.
stress A22 0.04 mg/ml -0.5 -0.2 -0.7 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 -0.2 -1.5 N.D. N.D.
carbon source L-Glutamine (C) -0.4 -0.1 -0.7 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.1 -0.4 -0.7 N.D. N.D.
stress sodium fluoride 100 mM +0.1 +0.1 -1.3 N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.2 -0.2 -0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.1 -0.7 N.D. N.D.
carbon source L-Asparagine (C) -0.1 -0.1 -0.8 N.D. N.D.
stress nitrate 200 mM -0.7 -0.5 +0.1 N.D. N.D.
micoeukaryotes C.elegans, mixed culture-1 +0.1 -0.1 -1.1 N.D. N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days -0.2 +0.1 -1.0 N.D. N.D.
stress Cisplatin 0.003 mg/ml -0.2 +0.0 -0.8 N.D. N.D.
stress Lomefloxacin 0.012 mM -1.0 -0.2 +0.1 N.D. N.D.
carbon source L-Malic (C) -0.0 +0.1 -1.0 N.D. N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.2 +0.1 -1.1 N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.2 -0.3 -0.7 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.3 +0.1 -0.9 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 -0.0 -0.8 N.D. N.D.
stress Sisomicin 0.125 mg/ml -0.6 -0.3 +0.6 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 +0.1 -0.8 N.D. N.D.
carbon source L-Rhamnose (C) +0.4 +0.3 -1.0 N.D. N.D.
carbon source Xylitol (C) -0.7 +0.2 +0.3 N.D. N.D.
carbon source L-Arabinose (C) +0.4 +0.1 -0.7 N.D. N.D.
carbon source D-Xylose (C) +0.4 +0.4 -0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 +0.1 +0.7 N.D. N.D.
stress Thallium(I) acetate 0.001 mg/ml -0.2 +0.0 +1.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +0.2 +0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.7 -0.1 -0.0 N.D. N.D.
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