Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS07020 and HSERO_RS07025 are separated by 338 nucleotidesHSERO_RS07025 and HSERO_RS07030 overlap by 4 nucleotidesHSERO_RS07030 and HSERO_RS07035 are separated by 169 nucleotidesHSERO_RS07035 and HSERO_RS07040 overlap by 1 nucleotides HSERO_RS07020: HSERO_RS07020 - cold-shock protein, at 1,599,607 to 1,599,813 _RS07020 HSERO_RS07025: HSERO_RS07025 - ATP-dependent Clp protease ClpS, at 1,600,152 to 1,600,466 _RS07025 HSERO_RS07030: HSERO_RS07030 - ATP-dependent Clp protease ATP-binding protein, at 1,600,463 to 1,602,766 _RS07030 HSERO_RS07035: HSERO_RS07035 - peptidase M48, at 1,602,936 to 1,604,045 _RS07035 HSERO_RS07040: HSERO_RS07040 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 1,604,045 to 1,604,494 _RS07040
Group Condition HSERO_RS07020 HSERO_RS07025 HSERO_RS07030 HSERO_RS07035 HSERO_RS07040
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -2.6 N.D. -0.5 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -2.3 N.D. -0.4 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -1.6 N.D. -0.9 N.D.
nitrogen source L-Proline (N) N.D. -1.2 N.D. -1.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. -2.0 N.D. -0.2 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -1.7 N.D. -0.3 N.D.
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM N.D. -1.3 N.D. -0.6 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 N.D. -1.4 N.D. -0.5 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -2.0 N.D. +0.0 N.D.
agar plate interaction control Taped volatile agar plate with no fungus N.D. -1.6 N.D. -0.3 N.D.
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM N.D. -1.2 N.D. -0.5 N.D.
agar plate interaction control Taped volatile agar plate with no fungus N.D. -1.3 N.D. -0.3 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. -1.2 N.D. -0.3 N.D.
nutrient Min media with glucose N.D. -1.4 N.D. -0.1 N.D.
stress sodium fluoride 100 mM N.D. -1.3 N.D. -0.3 N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days N.D. -1.2 N.D. -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.9 N.D. -0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.5 N.D. +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.5 N.D. +0.2 N.D.
carbon source D-Lactate (C) N.D. +0.6 N.D. -0.9 N.D.
carbon source D,L-Lactate (C) N.D. +0.7 N.D. -0.9 N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. +0.8 N.D. -0.9 N.D.
carbon source D-Glucose (C) N.D. +0.9 N.D. -0.8 N.D.
carbon source L-Proline (C) N.D. +1.2 N.D. -0.7 N.D.
carbon source Glycerol (C) N.D. +1.0 N.D. -0.5 N.D.
carbon source succinate (C) N.D. +1.0 N.D. -0.5 N.D.
carbon source D,L-Lactate (C) N.D. +1.6 N.D. -1.0 N.D.
carbon source D-Gluconic Acid (C) N.D. +1.5 N.D. -0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +1.9 N.D. -0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +3.0 N.D. -0.2 N.D.
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