Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS06930 and HSERO_RS06935 are separated by 174 nucleotidesHSERO_RS06935 and HSERO_RS06940 are separated by 76 nucleotidesHSERO_RS06940 and HSERO_RS06945 are separated by 335 nucleotidesHSERO_RS06945 and HSERO_RS06950 are separated by 164 nucleotides HSERO_RS06930: HSERO_RS06930 - transcription elongation factor GreA, at 1,578,502 to 1,578,978 _RS06930 HSERO_RS06935: HSERO_RS06935 - RNA-binding protein, at 1,579,153 to 1,579,611 _RS06935 HSERO_RS06940: HSERO_RS06940 - 23S rRNA methyltransferase, at 1,579,688 to 1,580,335 _RS06940 HSERO_RS06945: HSERO_RS06945 - ATP-dependent metalloprotease, at 1,580,671 to 1,582,560 _RS06945 HSERO_RS06950: HSERO_RS06950 - dihydropteroate synthase, at 1,582,725 to 1,583,573 _RS06950
Group Condition HSERO_RS06930 HSERO_RS06935 HSERO_RS06940 HSERO_RS06945 HSERO_RS06950
stress Fusidic 0.025 mg/ml N.D. -0.2 -3.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.8 -2.6 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.5 -2.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -2.2 -0.3 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.5 -0.7 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.0 -1.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.3 -0.9 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.1 -0.9 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.5 -0.4 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.6 -1.2 N.D. N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. -1.2 -0.6 N.D. N.D.
micoeukaryotes C.elegans, mixed culture-2 N.D. -2.6 +0.9 N.D. N.D.
control NoPredeControl N.D. -0.2 -1.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 -1.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.4 +0.3 N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus N.D. +0.5 -1.6 N.D. N.D.
nutrient Min media with glucose N.D. +0.5 -1.4 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. +0.4 -1.3 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.5 -1.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.8 +1.3 N.D. N.D.
carbon source L-Glutamine (C) N.D. +0.8 -0.9 N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +1.8 -1.2 N.D. N.D.
carbon source succinate (C) N.D. +1.4 -0.7 N.D. N.D.
carbon source D,L-Lactate (C) N.D. +1.4 -0.3 N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) N.D. +1.3 +0.4 N.D. N.D.
carbon source D-Gluconic Acid (C) N.D. +1.4 +0.3 N.D. N.D.
carbon source D-Galactose (C) N.D. +1.6 +0.4 N.D. N.D.
carbon source D-Gluconic Acid (C) N.D. +1.1 +1.0 N.D. N.D.
carbon source D-Ribose (C) N.D. +1.5 +0.6 N.D. N.D.
carbon source D-Lactate (C) N.D. +1.3 +1.0 N.D. N.D.
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