Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS06490	HSERO_RS06495	HSERO_RS06500	HSERO_RS06505	HSERO_RS06510
stress	Cisplatin 0.003 mg/ml	N.D.	-2.6	-1.3	+0.6	+0.0
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.1	-0.4	-0.5	-0.4
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	-0.0	-0.4	-0.2	-0.6
stress	Thallium(I) acetate 0.001 mg/ml	N.D.	+0.1	-0.1	-0.6	-0.4
nutrient	L-Serine	N.D.	-0.2	-0.2	-0.0	-0.5
stress	nitrite 20 mM	N.D.	+0.1	+0.0	-0.0	-1.0
plant	Control soil assay; outgrowth in LB	N.D.	+0.3	-0.3	-0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.1	+0.1	-0.3	-0.4
stress	Lomefloxacin 0.012 mM	N.D.	-0.2	-0.1	+0.5	-0.7
carbon source	L-Fucose (C)	N.D.	+0.2	+0.1	+0.1	-0.7
carbon source	L-Proline (C)	N.D.	+0.4	+0.0	+0.1	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.6	-0.2	+0.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.2	-0.0	-0.2	+0.6
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	N.D.	-0.2	-0.1	-0.1	+0.6
stress	Nickel (II) chloride 0.6 mM	N.D.	+0.0	+0.0	+0.5	-0.3
carbon source	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM	N.D.	+0.2	+0.2	-0.3	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	-0.1	-0.2	+0.6	+0.1
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.0	-0.2	+0.3	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	-0.2	+0.2	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.4	+0.0	+0.4	-0.1
control	NoPredeControl	N.D.	-0.2	+0.3	+0.3	+0.3
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	N.D.	+0.3	+0.2	-0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.0	-0.1	+0.6	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	-0.2	+0.7	+0.4
carbon source	D-Glucose (C)	N.D.	+0.3	+0.1	+0.4	+0.2
carbon source	Glycerol (C)	N.D.	+0.1	+0.1	+0.4	+0.4
stress	Cobalt chloride 0.2 mM	N.D.	+0.0	+0.3	+0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.0	+0.1	+1.3	-0.0
carbon source	D-Xylose (C)	N.D.	+0.2	+0.4	+0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.3	+0.2	+0.9	+0.4