Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS06485 and HSERO_RS06490 are separated by 153 nucleotidesHSERO_RS06490 and HSERO_RS06495 are separated by 65 nucleotidesHSERO_RS06495 and HSERO_RS06500 overlap by 22 nucleotidesHSERO_RS06500 and HSERO_RS06505 are separated by 248 nucleotides HSERO_RS06485: HSERO_RS06485 - filamentous hemagglutinin protein, at 1,465,642 to 1,473,618 _RS06485 HSERO_RS06490: HSERO_RS06490 - hypothetical protein, at 1,473,772 to 1,474,428 _RS06490 HSERO_RS06495: HSERO_RS06495 - nuclease, at 1,474,494 to 1,476,149 _RS06495 HSERO_RS06500: HSERO_RS06500 - ATP-dependent DNA helicase, at 1,476,128 to 1,478,401 _RS06500 HSERO_RS06505: HSERO_RS06505 - hypothetical protein, at 1,478,650 to 1,479,987 _RS06505
Group Condition HSERO_RS06485 HSERO_RS06490 HSERO_RS06495 HSERO_RS06500 HSERO_RS06505
stress Cisplatin 0.003 mg/ml -0.1 N.D. -2.6 -1.3 +0.6
agar plate interaction control Taped volatile agar plate with no fungus -0.9 N.D. -0.1 -0.4 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.4 N.D. -0.1 -0.3 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 N.D. -0.1 -0.2 +0.2
agar plate interaction control Taped volatile agar plate with no fungus -0.8 N.D. -0.2 -0.3 +0.1
supernatant control Vogels_fungal_media; pH 5.5 -0.4 N.D. -0.0 -0.4 -0.2
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -1.2 N.D. +0.0 -0.1 +0.2
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -1.1 N.D. -0.0 -0.1 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 N.D. -0.0 -0.1 +0.4
supernatant control Vogels_fungal_media 0.1X -0.7 N.D. +0.0 -0.2 +0.3
supernatant control Vogels_fungal_media 0.1X -0.6 N.D. +0.0 -0.2 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 N.D. -0.1 -0.2 +0.7
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.5 N.D. +0.1 -0.2 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.2 N.D. -0.1 -0.2 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 N.D. -0.2 -0.0 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.4 N.D. +0.2 -0.0 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 N.D. -0.6 -0.2 +0.4
carbon source D-Ribose (C) +0.7 N.D. +0.3 +0.0 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 N.D. -0.1 +0.0 -0.0
carbon source D-Gluconic Acid (C) +0.7 N.D. +0.2 +0.0 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 N.D. +0.3 +0.0 -0.2
carbon source D-Sorbitol (C) +0.8 N.D. +0.2 -0.0 +0.1
carbon source Xylitol (C) +1.2 N.D. -0.2 +0.1 -0.1
carbon source D-Glucose (C) +0.3 N.D. +0.3 +0.1 +0.4
carbon source Glycerol (C) +0.5 N.D. +0.1 +0.1 +0.4
carbon source L-Fucose (C) +0.8 N.D. +0.2 +0.1 +0.1
carbon source D-Ribose (C) +0.6 N.D. +0.3 +0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 N.D. -0.0 +0.1 +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. +0.3 +0.2 +0.9
carbon source D-Xylose (C) +0.5 N.D. +0.2 +0.4 +0.5
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