Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS06460	HSERO_RS06465	HSERO_RS06470	HSERO_RS06475	HSERO_RS06480
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	-0.4	-0.6	-0.2	-1.1
stress	Fusidic 0.025 mg/ml	-0.2	-1.1	-0.7	-0.1	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.2	-0.8	-0.4	-0.1	-0.6
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.2	-0.1	-0.3	-1.3
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.5	-0.5	-0.4	-0.1	-0.6
supernatant control	Vogels_fungal_media; pH 5.5	-0.0	-1.1	-0.1	+0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.0	+0.4	-0.3	-1.2
plant	Control soil assay; outgrowth in LB	-0.5	-1.3	+0.4	-0.1	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	-1.6	+0.1	+0.4	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-1.5	-0.2	-0.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+0.4	+0.3	-0.3	-1.0
carbon source	L-Lactate (C)	-0.0	-1.3	-0.4	+0.1	+0.4
carbon source	a-Ketoglutaric (C)	+0.4	-1.4	-0.1	-0.1	-0.0
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	-0.7	+0.7	-0.0	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.8	+0.5	+0.0	-0.3	-0.4
carbon source	D-Glucose (C)	-0.4	-1.4	+0.1	+0.0	+0.7
carbon source	L-Rhamnose (C)	+0.0	-1.6	+0.4	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.7	-0.6	+0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.9	+0.7	-0.2	+0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.2	-0.8	+0.3	-0.4	+0.4
stress	Sisomicin 0.125 mg/ml	-0.8	+1.0	+0.1	-0.2	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-1.2	+0.9	-0.2	+0.6
carbon source	D-Ribose (C)	+0.7	-0.8	-0.1	-0.1	+0.6
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	+0.4	-0.5	+0.2	+0.6	-0.3
control	NoPredeControl	+0.8	+1.1	-1.2	+0.5	-0.8
carbon source	D-Glucose-6-Phosphate (C)	+0.5	-0.9	+0.5	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	-0.6	-0.2	+0.2	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.2	+1.1	-0.3	+0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.3	-0.9	+1.1	+0.3	+0.1
carbon source	Xylitol (C)	+0.3	-0.1	+0.3	+0.3	+1.1