Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS06445	HSERO_RS06450	HSERO_RS06455	HSERO_RS06460	HSERO_RS06465
plant	Control soil assay; outgrowth in LB	+0.0	-0.3	-0.0	-0.5	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+0.2	-0.3	+0.1	-1.6
carbon source	L-Rhamnose (C)	+0.3	-0.1	-0.4	+0.0	-1.6
stress	Fusidic 0.025 mg/ml	+0.1	-0.0	-0.4	-0.2	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.1	+0.2	-0.0	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	+0.2	+0.4	+0.0	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.3	-0.3	+0.4	-0.6
carbon source	L-Lactate (C)	+0.5	-0.0	+0.2	-0.0	-1.3
carbon source	D-Lactate (C)	+0.5	+0.2	-0.3	-0.2	-0.8
agar plate interaction control	Taped volatile agar plate with no fungus	+0.2	+0.2	+0.2	-0.4	-0.7
micoeukaryotes	C.elegans, mixed culture-1	-0.3	+0.2	-0.4	+0.4	-0.5
carbon source	a-Ketoglutaric (C)	+0.3	-0.0	+0.2	+0.4	-1.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.1	-0.3	+0.5	+0.3	-0.9
carbon source	D-Glucose (C)	+0.6	+0.3	+0.6	-0.4	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	-0.1	+0.7	+0.3	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.3	+0.2	-0.2	-0.8	+0.5
stress	nitrate 200 mM	-0.2	+0.1	-0.6	-0.2	+0.9
carbon source	D-Ribose (C)	-0.2	+0.1	+0.2	+0.7	-0.8
stress	A22 0.04 mg/ml	-0.1	+0.0	-0.4	-0.4	+0.9
carbon source	D-Glucose-6-Phosphate (C)	+0.5	-0.2	+0.2	+0.5	-0.9
carbon source	m-Inositol (C)	+0.8	-0.3	+0.1	+0.1	-0.5
stress	Sisomicin 0.125 mg/ml	+0.3	+0.2	-0.3	-0.8	+1.0
vitamin	With vitamins t1	-0.3	+0.1	+0.5	-0.4	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.1	+1.2	-0.6	+0.1
plant	Control soil assay; outgrowth in LB	-0.2	+0.4	-0.3	+0.3	+0.7
carbon source	D-Lactate (C)	+0.6	-0.1	+0.5	+0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+0.8	+0.0	-0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	-0.2	-0.1	+0.2	+1.1
vitamin	With vitamins t2	-0.4	-0.0	+0.3	+0.3	+0.7
control	NoPredeControl	+0.3	+0.2	+0.1	+0.8	+1.1