Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS06415	HSERO_RS06420	HSERO_RS06425	HSERO_RS06430	HSERO_RS06435
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-3.6	-0.2	N.D.	+0.2
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.3	-2.3	+0.1	N.D.	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-1.6	-0.3	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-1.1	-0.4	N.D.	+0.1
r2a control	R2A control	-0.2	-0.9	-0.4	N.D.	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-1.4	+0.0	N.D.	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-1.0	-0.3	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.3	-0.4	N.D.	-0.4
carbon source	L-Fucose (C)	+0.0	-1.5	-0.0	N.D.	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.6	-0.0	N.D.	-0.1
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.4	-0.6	-0.5	N.D.	+0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.4	-1.3	-0.2	N.D.	-0.1
nitrogen source	Ammonium chloride (N); high aeration	+0.3	-1.5	+0.1	N.D.	-0.0
stress	A22 0.04 mg/ml	+0.3	-1.2	-0.0	N.D.	-0.1
carbon source	D-Ribose (C)	+0.4	-0.9	+0.2	N.D.	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	-1.1	-0.0	N.D.	+0.3
control	NoPredeControl	-0.6	+0.9	+0.2	N.D.	+0.1
stress	Sisomicin 0.125 mg/ml	-0.5	+1.1	-0.2	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.9	+0.2	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+1.3	-0.2	N.D.	+0.2
carbon source	D-Glucose (C)	+0.3	+0.9	-0.4	N.D.	+0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.2	+1.2	+0.2	N.D.	+0.1
carbon source	Glycerol (C)	+0.2	+1.3	-0.0	N.D.	-0.1
carbon source	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL	-0.4	+1.3	+0.2	N.D.	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.3	+1.5	-0.3	N.D.	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+1.2	-0.2	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+1.6	-0.2	N.D.	+0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.4	+1.0	+0.0	N.D.	+0.1
carbon source	D-Ribose (C)	+0.7	+0.7	+0.2	N.D.	+0.2
carbon source	L-Fucose (C)	+0.6	+1.3	+0.5	N.D.	-0.0