Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS06075 and HSERO_RS06080 are separated by 107 nucleotidesHSERO_RS06080 and HSERO_RS06085 are separated by 197 nucleotidesHSERO_RS06085 and HSERO_RS06090 are separated by 1042 nucleotidesHSERO_RS06090 and HSERO_RS06095 are separated by 347 nucleotides HSERO_RS06075: HSERO_RS06075 - membrane protein, at 1,369,892 to 1,370,272 _RS06075 HSERO_RS06080: HSERO_RS06080 - hypothetical protein, at 1,370,380 to 1,370,835 _RS06080 HSERO_RS06085: HSERO_RS06085 - hypothetical protein, at 1,371,033 to 1,372,259 _RS06085 HSERO_RS06090: HSERO_RS06090 - restriction endonuclease, at 1,373,302 to 1,374,222 _RS06090 HSERO_RS06095: HSERO_RS06095 - tRNA-Lys, at 1,374,570 to 1,374,645 _RS06095
Group Condition HSERO_RS06075 HSERO_RS06080 HSERO_RS06085 HSERO_RS06090 HSERO_RS06095
stress Cisplatin 0.003 mg/ml +0.3 -2.5 -0.2 +0.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.0 -0.2 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -0.5 -0.2 -0.2 N.D.
carbon source D-Lactate (C) -1.0 -0.6 +0.2 +0.1 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.9 -0.2 -0.2 N.D.
carbon source pyruvate (C) -0.2 -0.8 -0.2 +0.1 N.D.
stress Lomefloxacin 0.012 mM -0.7 -0.2 +0.1 -0.3 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.4 -0.7 +0.1 -0.1 N.D.
carbon source D-Galactose (C) -0.8 -0.1 -0.0 +0.1 N.D.
carbon source D-Ribose (C) -0.5 -0.8 +0.3 +0.1 N.D.
carbon source D-Glucose (C) -0.4 -0.4 +0.2 -0.1 N.D.
carbon source D-Ribose (C) -0.6 -0.3 +0.2 -0.1 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.1 -0.9 -0.1 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.0 -0.9 +0.1 +0.0 N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.2 -0.7 -0.1 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 -0.5 -0.2 -0.2 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 -0.2 -0.1 +0.2 N.D.
carbon source D-Xylose (C) -0.2 -0.8 +0.2 +0.1 N.D.
carbon source L-Arabinose (C) -0.6 -0.1 +0.2 -0.1 N.D.
carbon source L-Rhamnose (C) -0.3 -0.5 +0.2 -0.0 N.D.
carbon source D-Glucose (C) -0.3 -0.5 +0.2 +0.1 N.D.
carbon source m-Inositol (C) +0.3 -0.5 -0.0 -0.2 N.D.
supernatant control Vogels_fungal_media 0.1X +0.2 -0.6 -0.2 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 -0.4 +0.4 -0.1 N.D.
supernatant control Vogels_fungal_media 0.1X +0.4 -0.8 +0.1 +0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.4 -0.2 -0.3 +0.1 N.D.
carbon source L-Proline (C) +0.6 -0.4 -0.0 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.6 -0.0 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.0 -0.3 -0.2 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.6 +0.2 +0.2 N.D.
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