Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS05900	HSERO_RS05905	HSERO_RS05910	HSERO_RS05915	HSERO_RS05920
carbon source	L-Malic (C)	-0.8	N.D.	-3.4	-1.6	-2.5
control	NoPredeControl	+0.1	N.D.	-3.8	-0.5	-1.8
carbon source	L-Malic (C)	-0.3	N.D.	-1.3	-1.6	-2.7
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-1.1	N.D.	-2.6	-0.3	-0.8
vitamin	With vitamins t2	-0.6	N.D.	-3.0	+0.0	-0.4
carbon source	D-Glucose (C)	-0.5	N.D.	-2.0	-0.3	-1.2
nitrogen source	nitrate (N); high aeration	-0.3	N.D.	-3.6	+0.0	+0.0
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.6	N.D.	-2.6	+0.2	-0.7
vitamin	No vitamins t2	-0.7	N.D.	-2.9	+0.3	-0.4
carbon source	succinate (C)	-0.1	N.D.	-1.9	-0.4	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	N.D.	-3.9	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	N.D.	-0.7	-0.2	-2.2
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	-0.5	N.D.	-2.4	+0.2	-0.5
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	-0.9	N.D.	-2.1	+0.2	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.5	N.D.	-3.0	+0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	N.D.	-1.7	-0.8	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	N.D.	-1.7	-0.5	-0.4
vitamin	No vitamins t1	-0.3	N.D.	-2.5	+0.2	-0.4
carbon source	L-Glutamine (C)	-0.1	N.D.	-2.2	-0.3	-0.5
micoeukaryotes	Dictyostellum sp.mixed culture-2	-0.2	N.D.	-2.1	+0.1	-0.8
nitrogen source	nitrate (N); low aeration	-0.2	N.D.	-2.7	-0.0	+0.1
carbon source	L-Glutamine (C)	+0.1	N.D.	-2.7	-0.4	+0.2
carbon source	a-Ketoglutaric (C)	+0.3	N.D.	-1.4	-0.6	-1.0
carbon source	succinate (C)	+0.5	N.D.	-1.4	-1.0	-0.6
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	-0.3	N.D.	-2.5	+0.6	+0.1
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	-0.2	N.D.	-2.3	+0.5	-0.0
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	+0.4	N.D.	-2.6	+0.5	-0.1
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	+0.1	N.D.	-1.9	+0.8	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	N.D.	-2.1	-0.2	+1.3
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.2	N.D.	+3.3	-0.3	-0.2