Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS05810 and HSERO_RS05815 overlap by 19 nucleotidesHSERO_RS05815 and HSERO_RS05820 are separated by 53 nucleotidesHSERO_RS05820 and HSERO_RS05825 are separated by 376 nucleotidesHSERO_RS05825 and HSERO_RS05830 are separated by 100 nucleotides HSERO_RS05810: HSERO_RS05810 - sulfurtransferase, at 1,324,540 to 1,325,463 _RS05810 HSERO_RS05815: HSERO_RS05815 - osmotically inducible protein C, at 1,325,445 to 1,325,831 _RS05815 HSERO_RS05820: HSERO_RS05820 - IclR family transcriptional regulator, at 1,325,885 to 1,326,676 _RS05820 HSERO_RS05825: HSERO_RS05825 - ABC transporter substrate-binding protein, at 1,327,053 to 1,327,799 _RS05825 HSERO_RS05830: HSERO_RS05830 - amino acid ABC transporter permease, at 1,327,900 to 1,328,556 _RS05830
Group Condition HSERO_RS05810 HSERO_RS05815 HSERO_RS05820 HSERO_RS05825 HSERO_RS05830
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.8 +0.1 -1.9 -0.1 +0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.8 -0.6 -2.0 -0.1 +0.0
plant Control soil assay; outgrowth in LB -1.3 -0.2 -1.0 +0.0 -0.0
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.5 +0.6 -1.7 -0.3 -0.4
stress Lomefloxacin 0.012 mM -0.5 -0.0 -1.1 -0.1 -0.5
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.2 +0.1 -1.7 -0.2 -0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 -1.0 -1.6 +0.0 +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2 -0.2 -1.6 +0.1 +0.2
carbon source D-Glucose (C) -0.5 -1.1 -0.0 -0.3 +0.2
carbon source Xylitol (C) +0.5 -0.7 -0.9 +0.0 -0.1
carbon source D-Ribose (C) -0.4 +0.4 -0.8 +0.0 -0.4
carbon source D-Mannose (C) -1.0 +0.4 -0.8 +0.0 +0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.7 +1.4 -1.5 +0.2 -0.4
carbon source D-Gluconic Acid (C) -0.5 -0.9 +0.4 -0.1 +0.1
carbon source D-Mannose (C) -0.3 +0.5 -1.0 +0.3 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -0.4 +0.0 +0.7 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 -0.7 +0.1 -0.3 +0.1
agar plate interaction control Taped volatile agar plate with no fungus -0.5 +1.3 +0.0 -0.4 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +0.3 +0.5 -0.4 -0.7
carbon source D-Lactate (C) +0.7 +0.7 -0.5 -0.2 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +1.2 +0.2 -0.5 +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +1.1 +0.3 +0.3 -0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +1.1 +0.1 -0.2 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +0.5 +0.4 -0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.2 +0.9 -0.2 -0.2
carbon source L-Fucose (C) +0.9 +0.5 -0.1 -0.1 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +0.7 +0.5 -0.2 -0.1
agar plate interaction control Taped volatile agar plate with no fungus +1.7 +0.5 +0.3 -0.3 -0.1
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +1.0 +0.2 +0.9 -0.2 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +0.5 +0.3 +0.3 +0.4
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