Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS05760	HSERO_RS05765	HSERO_RS05770	HSERO_RS05775	HSERO_RS05780
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-0.6	-0.9	-0.8	-0.3	-0.3
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	-0.1	-0.4	-0.3	-0.2	-0.7
plant	Control soil assay; outgrowth in LB	-0.3	+0.0	-0.2	-0.1	-0.8
carbon source	Carbon source Phenylacetic 5 mM	-0.1	-0.2	-0.1	-0.2	-0.8
carbon source	D-Ribose (C)	+0.0	-0.5	-0.1	+0.3	-0.8
carbon source	L-Arabinose (C)	+0.1	-0.5	+0.1	+0.4	-1.0
carbon source	D-Lactate (C)	-0.2	-0.0	+0.0	+0.3	-0.9
carbon source	L-Rhamnose (C)	+0.2	-0.2	-0.1	+0.2	-0.9
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.0	-0.1	-0.3	+0.5	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.0	+0.4	-0.3	-0.7
carbon source	D-Glucose (C)	+0.0	-0.2	-0.1	+0.3	-0.7
nitrogen source	nitrate (N); low aeration	+0.1	-0.3	-0.1	+0.4	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.2	+0.4	+0.1	-0.6
carbon source	D-Xylose (C)	+0.2	+0.1	-0.1	+0.3	-0.6
micoeukaryotes	C.elegans, mixed culture-2	+0.3	+0.3	-0.1	+0.1	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.2	+0.5	+0.3	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	+0.5	+0.2	+0.4	-0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.5	+0.4	-0.1	-0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.1	+0.3	+0.2	+0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.6	+0.5	-0.3	-0.4
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.4	+0.3	+0.4	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+0.4	+0.5	+0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.3	+0.3	+0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	-0.1	+1.0	-0.2	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	+0.2	+0.3	+0.6	+0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+1.2	+0.5	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.2	+0.7	+0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.5	+0.2	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.6	+0.3	-0.0	+0.4
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.8	+0.4	+0.3	+0.2