Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS05505 and HSERO_RS05510 are separated by 43 nucleotidesHSERO_RS05510 and HSERO_RS05515 are separated by 76 nucleotidesHSERO_RS05515 and HSERO_RS05520 are separated by 353 nucleotidesHSERO_RS05520 and HSERO_RS05525 overlap by 4 nucleotides HSERO_RS05505: HSERO_RS05505 - transcriptional regulator, at 1,246,224 to 1,247,078 _RS05505 HSERO_RS05510: HSERO_RS05510 - glucose-6-phosphate 1-dehydrogenase, at 1,247,122 to 1,248,588 _RS05510 HSERO_RS05515: HSERO_RS05515 - glucose-6-phosphate isomerase, at 1,248,665 to 1,250,329 _RS05515 HSERO_RS05520: HSERO_RS05520 - phosphogluconate dehydratase, at 1,250,683 to 1,252,554 _RS05520 HSERO_RS05525: HSERO_RS05525 - ketohydroxyglutarate aldolase, at 1,252,551 to 1,253,180 _RS05525
Group Condition HSERO_RS05505 HSERO_RS05510 HSERO_RS05515 HSERO_RS05520 HSERO_RS05525
carbon source Xylitol (C) -2.1 N.D. -4.8 N.D. N.D.
carbon source D-Lactate (C) -1.3 N.D. -4.9 N.D. N.D.
carbon source D-Mannose (C) -1.1 N.D. -4.9 N.D. N.D.
carbon source D-Mannose (C) -1.4 N.D. -4.7 N.D. N.D.
carbon source D-Ribose (C) -1.3 N.D. -4.6 N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) -0.8 N.D. -4.9 N.D. N.D.
nitrogen source L-Proline (N) -0.8 N.D. -4.8 N.D. N.D.
carbon source Xylitol (C) -1.1 N.D. -4.6 N.D. N.D.
stress Fusidic 0.025 mg/ml -0.6 N.D. -4.7 N.D. N.D.
carbon source D-Ribose (C) -0.7 N.D. -4.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.4 N.D. -2.8 N.D. N.D.
carbon source m-Inositol (C) -0.2 N.D. -4.9 N.D. N.D.
stress A22 0.04 mg/ml +0.2 N.D. -4.9 N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) +0.2 N.D. -4.8 N.D. N.D.
carbon source L-Rhamnose (C) +0.3 N.D. -4.8 N.D. N.D.
carbon source D-Glucose (C) +0.3 N.D. -4.8 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -1.7 N.D. -2.8 N.D. N.D.
carbon source Glycerol (C) +0.3 N.D. -4.8 N.D. N.D.
carbon source a-Ketoglutaric (C) -0.9 N.D. -3.6 N.D. N.D.
carbon source D-Sorbitol (C) +0.6 N.D. -5.0 N.D. N.D.
carbon source D,L-Lactate (C) -1.2 N.D. -3.0 N.D. N.D.
carbon source D-Glucose (C) +0.2 N.D. -4.3 N.D. N.D.
carbon source m-Inositol (C) -0.4 N.D. -3.8 N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus -1.3 N.D. -2.8 N.D. N.D.
stress Lomefloxacin 0.012 mM +0.5 N.D. -4.6 N.D. N.D.
carbon source D-Gluconic Acid (C) -0.4 N.D. -3.6 N.D. N.D.
carbon source D-Galactose (C) +0.7 N.D. -4.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 N.D. -2.9 N.D. N.D.
stress Dimethyl Sulfoxide 5 vol% -0.6 N.D. -3.3 N.D. N.D.
carbon source D-Galactose (C) +1.0 N.D. -4.8 N.D. N.D.
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