Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS05225 and HSERO_RS05230 are separated by 19 nucleotidesHSERO_RS05230 and HSERO_RS05235 are separated by 353 nucleotidesHSERO_RS05235 and HSERO_RS05240 are separated by 47 nucleotidesHSERO_RS05240 and HSERO_RS05245 are separated by 7 nucleotides HSERO_RS05225: HSERO_RS05225 - L-arabinolactonase (EC 3.1.1.15) (from data), at 1,157,330 to 1,158,208 _RS05225 HSERO_RS05230: HSERO_RS05230 - IclR family transcriptional regulator, at 1,158,228 to 1,159,076 _RS05230 HSERO_RS05235: HSERO_RS05235 - L-fuconate dehydratase (EC 4.2.1.68) (from data), at 1,159,430 to 1,160,707 _RS05235 HSERO_RS05240: HSERO_RS05240 - short-chain dehydrogenase, at 1,160,755 to 1,161,531 _RS05240 HSERO_RS05245: HSERO_RS05245 - hypothetical protein, at 1,161,539 to 1,161,901 _RS05245
Group Condition HSERO_RS05225 HSERO_RS05230 HSERO_RS05235 HSERO_RS05240 HSERO_RS05245
carbon source L-Fucose (C) +0.8 N.D. -2.2 -3.1 -1.9
carbon source L-Fucose (C) +0.9 N.D. -2.6 -2.2 -1.8
carbon source L-Arabinose (C) -3.7 N.D. -0.1 -0.0 -0.2
carbon source D-Mannose (C) -2.0 N.D. +0.1 -0.6 -0.3
carbon source L-Arabinose (C) -1.9 N.D. -0.4 +0.5 -0.8
carbon source D-Glucose (C) -1.6 N.D. -0.3 +0.2 -0.6
carbon source D-Xylose (C) -1.0 N.D. -0.0 -0.4 -0.7
control NoPredeControl +0.1 N.D. -0.2 -0.2 -1.7
vitamin No vitamins t2 -1.9 N.D. -0.2 -0.2 +0.3
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days -1.1 N.D. -0.1 -0.2 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. -0.2 -0.8 -0.6
vitamin No vitamins t1 -1.4 N.D. -0.0 -0.3 +0.6
carbon source D-Glucose (C) -1.8 N.D. +0.3 +0.1 +0.3
carbon source L-Proline (C) -1.3 N.D. -0.0 +0.0 +0.4
carbon source D-Glucose (C) -0.7 N.D. +0.2 +0.3 -0.5
vitamin With vitamins t2 -1.2 N.D. -0.0 +0.3 +0.3
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.4 N.D. +0.2 +0.5 -0.5
plant Control soil assay; outgrowth in LB +0.2 N.D. +0.3 +0.4 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 N.D. -0.1 -0.3 +0.8
stress Lomefloxacin 0.012 mM -1.1 N.D. +0.3 +0.5 +0.2
stress Cobalt chloride 0.2 mM +0.6 N.D. -0.0 -0.7 +0.6
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.2 N.D. +0.3 +0.6 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 N.D. -0.6 +0.2 +0.6
carbon source D-Ribose (C) +0.4 N.D. -0.3 +0.0 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 N.D. -0.2 -0.1 +1.2
carbon source D-Ribose (C) -0.0 N.D. -0.0 +0.1 +1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 N.D. +0.2 -0.0 +0.5
stress nitrate 200 mM -0.2 N.D. +0.3 +1.0 +0.7
carbon source Xylitol (C) +0.1 N.D. +0.1 +0.0 +2.2
carbon source Xylitol (C) +0.5 N.D. -0.1 -0.3 +2.4
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