Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS05065 and HSERO_RS05070 overlap by 4 nucleotidesHSERO_RS05070 and HSERO_RS05075 are separated by 1153 nucleotidesHSERO_RS05075 and HSERO_RS05080 are separated by 231 nucleotidesHSERO_RS05080 and HSERO_RS05085 are separated by 159 nucleotides HSERO_RS05065: HSERO_RS05065 - 2-keto-4-pentenoate hydratase, at 1,118,336 to 1,119,319 _RS05065 HSERO_RS05070: HSERO_RS05070 - UDP-glucose 4-epimerase, at 1,119,316 to 1,120,278 _RS05070 HSERO_RS05075: HSERO_RS05075 - diguanylate cyclase, at 1,121,432 to 1,122,436 _RS05075 HSERO_RS05080: HSERO_RS05080 - PEP-CTERM domain protein, at 1,122,668 to 1,123,348 _RS05080 HSERO_RS05085: HSERO_RS05085 - sugar ABC transporter permease, at 1,123,508 to 1,124,551 _RS05085
Group Condition HSERO_RS05065 HSERO_RS05070 HSERO_RS05075 HSERO_RS05080 HSERO_RS05085
plant Control soil assay; outgrowth in LB -0.2 -0.5 -0.3 -0.6 -0.5
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM +0.3 -0.1 -0.1 +0.1 -1.9
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM +0.2 -0.1 -0.2 +0.3 -1.8
carbon source L-Arabinose (C) -0.3 +0.1 -0.1 -0.6 -0.5
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM +0.4 -0.0 -0.2 +0.3 -2.0
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM +0.4 -0.1 -0.2 -0.1 -1.2
stress Chloride stress +0.2 -0.2 -0.4 -0.3 -0.1
carbon source D-Xylose (C) -0.5 +0.3 +0.2 -0.4 -0.2
carbon source m-Inositol (C) -0.3 +0.3 -0.3 -0.1 -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 -0.5 -0.0 -0.2 -0.3
carbon source D-Gluconic Acid (C) -0.2 +0.0 +0.3 -0.7 +0.1
stress Lomefloxacin 0.012 mM -0.4 +0.3 +0.3 -0.5 -0.2
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.2 -0.7 +0.4 -0.1
agar plate interaction control Taped volatile agar plate with no fungus +0.1 +0.3 -0.5 -0.4 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 -0.4 -0.3 +0.0 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 -0.1 +0.2 -0.4 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.0 -0.3 +0.5 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.0 +0.6 +0.4 -0.5 +0.0
control NoPredeControl +0.7 +0.2 -0.0 -0.8 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.6 -0.1 +0.1 -0.3
carbon source L-Malic (C) +0.3 +0.5 +0.2 -0.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 -0.2 -0.0 -0.4 +0.9
agar plate interaction control Taped volatile agar plate with no fungus +0.2 +0.2 -0.3 +0.4 +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.5 +0.3 +0.1 +0.3 +0.1
stress Dimethyl Sulfoxide 5 vol% +0.3 +0.5 +0.3 +0.4 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.2 +0.4 +0.2 +0.2 +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.3 +0.2 +0.4 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.2 -0.2 +0.5 -0.2 +0.3
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.9 -0.2 -0.2 -0.3 +10.7
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.8 -0.0 -0.2 -0.1 +10.7
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