Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS04990 and HSERO_RS04995 are separated by 124 nucleotidesHSERO_RS04995 and HSERO_RS05000 are separated by 977 nucleotidesHSERO_RS05000 and HSERO_RS05005 are separated by 58 nucleotidesHSERO_RS05005 and HSERO_RS05010 are separated by 156 nucleotides HSERO_RS04990: HSERO_RS04990 - molecular chaperone GroEL, at 1,098,311 to 1,099,960 _RS04990 HSERO_RS04995: HSERO_RS04995 - molecular chaperone GroES, at 1,100,085 to 1,100,375 _RS04995 HSERO_RS05000: HSERO_RS05000 - microcystin-dependent protein, at 1,101,353 to 1,102,144 _RS05000 HSERO_RS05005: HSERO_RS05005 - hypothetical protein, at 1,102,203 to 1,103,180 _RS05005 HSERO_RS05010: HSERO_RS05010 - filamentous hemagglutinin outer membrane protein, at 1,103,337 to 1,108,043 _RS05010
Group Condition HSERO_RS04990 HSERO_RS04995 HSERO_RS05000 HSERO_RS05005 HSERO_RS05010
stress Cisplatin 0.003 mg/ml N.D. N.D. -0.5 -0.3 -0.1
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days N.D. N.D. -0.3 -0.1 -0.4
stress Sisomicin 0.125 mg/ml N.D. N.D. +0.1 -0.6 +0.0
plant Control soil assay; outgrowth in LB N.D. N.D. +0.3 -0.2 -0.4
carbon source a-Ketoglutaric (C) N.D. N.D. +0.2 -0.4 -0.1
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB N.D. N.D. -0.3 +0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.3 -0.2 -0.3
carbon source Carbon source Deoxyribonucleic from herring sperm 5 mg/mL N.D. N.D. +0.0 -0.4 +0.3
carbon source D-Lactate (C) N.D. N.D. +0.3 -0.2 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.2 +0.3 -0.1
carbon source succinate (C) N.D. N.D. +0.2 -0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.2 +0.3 -0.1
carbon source D-Xylose (C) N.D. N.D. +0.5 -0.2 -0.3
carbon source D-Galactose (C) N.D. N.D. +0.3 -0.3 +0.1
carbon source L-Fucose (C) N.D. N.D. +0.4 -0.3 +0.1
carbon source D-Gluconic Acid (C) N.D. N.D. +0.4 -0.0 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. N.D. -0.2 +0.4 +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. +0.4 -0.2 +0.2
carbon source D-Mannose (C) N.D. N.D. +0.5 -0.1 +0.2
carbon source Carbon source Phenylacetic 5 mM N.D. N.D. +0.4 -0.0 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. N.D. +0.1 +0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.4 +0.1 +0.1
carbon source Carbon source Phenylacetic 5 mM N.D. N.D. +0.3 +0.1 +0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. +0.3 +0.4 -0.1
supernatant control Vogels_fungal_media 0.1X N.D. N.D. +0.3 +0.3 +0.1
carbon source Xylitol (C) N.D. N.D. +0.5 +0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. +0.2 +0.4 +0.2
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. N.D. +0.8 +0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.1 +0.4 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. +0.2 +0.5 +0.3
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