Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS04980 and HSERO_RS04985 are separated by 571 nucleotidesHSERO_RS04985 and HSERO_RS04990 are separated by 301 nucleotidesHSERO_RS04990 and HSERO_RS04995 are separated by 124 nucleotidesHSERO_RS04995 and HSERO_RS05000 are separated by 977 nucleotides HSERO_RS04980: HSERO_RS04980 - methionine ABC transporter ATP-binding protein, at 1,095,183 to 1,096,220 _RS04980 HSERO_RS04985: HSERO_RS04985 - porin, at 1,096,792 to 1,098,009 _RS04985 HSERO_RS04990: HSERO_RS04990 - molecular chaperone GroEL, at 1,098,311 to 1,099,960 _RS04990 HSERO_RS04995: HSERO_RS04995 - molecular chaperone GroES, at 1,100,085 to 1,100,375 _RS04995 HSERO_RS05000: HSERO_RS05000 - microcystin-dependent protein, at 1,101,353 to 1,102,144 _RS05000
Group Condition HSERO_RS04980 HSERO_RS04985 HSERO_RS04990 HSERO_RS04995 HSERO_RS05000
stress Cisplatin 0.003 mg/ml -0.5 -0.1 N.D. N.D. -0.5
plant Control soil assay; outgrowth in LB -0.3 -0.5 N.D. N.D. +0.3
control NoPredeControl -0.3 -0.3 N.D. N.D. +0.2
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.2 -0.2 N.D. N.D. -0.3
stress Lomefloxacin 0.012 mM +0.2 -0.6 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 +0.0 N.D. N.D. +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 +0.0 N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.3 N.D. N.D. -0.3
agar plate interaction control Taped volatile agar plate with no fungus +0.4 -0.3 N.D. N.D. +0.3
carbon source Xylitol (C) +0.4 -0.2 N.D. N.D. +0.3
carbon source a-Ketoglutaric (C) +0.5 -0.3 N.D. N.D. +0.2
nutrient Min media with glucose +0.4 -0.1 N.D. N.D. +0.2
carbon source D-Glucose (C) +0.5 -0.2 N.D. N.D. +0.2
carbon source L-Asparagine (C) +0.5 -0.2 N.D. N.D. +0.2
carbon source m-Inositol (C) +0.5 -0.2 N.D. N.D. +0.2
carbon source L-Fucose (C) +0.5 -0.1 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +0.2 N.D. N.D. -0.1
carbon source D-Galactose (C) +0.6 -0.3 N.D. N.D. +0.3
carbon source D-Gluconic Acid (C) +0.5 -0.2 N.D. N.D. +0.4
carbon source L-Fucose (C) +0.5 -0.1 N.D. N.D. +0.4
carbon source D-Lactate (C) +0.4 +0.2 N.D. N.D. +0.2
carbon source D-Ribose (C) +0.7 +0.2 N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 -0.1 N.D. N.D. +0.2
carbon source D-Mannose (C) +0.5 -0.0 N.D. N.D. +0.5
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.3 -0.1 N.D. N.D. +0.8
carbon source Xylitol (C) +0.5 -0.1 N.D. N.D. +0.5
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.5 +0.1 N.D. N.D. +0.3
carbon source D-Glucose-6-Phosphate (C) +0.8 -0.0 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +0.5 N.D. N.D. +0.2
carbon source D-Xylose (C) +0.5 +0.1 N.D. N.D. +0.5
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