Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS04780 and HSERO_RS04785 are separated by 88 nucleotidesHSERO_RS04785 and HSERO_RS04790 are separated by 46 nucleotidesHSERO_RS04790 and HSERO_RS04795 are separated by 1 nucleotidesHSERO_RS04795 and HSERO_RS04800 are separated by 6 nucleotides HSERO_RS04780: HSERO_RS04780 - ABC transporter permease, at 1,045,754 to 1,046,797 _RS04780 HSERO_RS04785: HSERO_RS04785 - ABC transporter permease, at 1,046,886 to 1,048,202 _RS04785 HSERO_RS04790: HSERO_RS04790 - acyl-CoA dehydrogenase, at 1,048,249 to 1,049,508 _RS04790 HSERO_RS04795: HSERO_RS04795 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,049,510 to 1,050,271 _RS04795 HSERO_RS04800: HSERO_RS04800 - LysR family transcriptional regulator, at 1,050,278 to 1,051,192 _RS04800
Group Condition HSERO_RS04780 HSERO_RS04785 HSERO_RS04790 HSERO_RS04795 HSERO_RS04800
carbon source D-Glucose-6-Phosphate (C) -0.1 +0.3 -0.6 -0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -0.1 -0.3 +0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.0 -0.5 -0.1 -0.2
plant Control soil assay; outgrowth in LB -0.2 -0.2 +0.2 -0.4 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.5 -0.3 -0.1 -0.3
carbon source D-Galactose (C) +0.1 +0.3 -0.5 -0.4 -0.4
carbon source L-Arabinose (C) +0.3 -0.2 -0.9 -0.1 -0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.1 -0.5 -0.4 +0.1 -0.3
stress Lomefloxacin 0.012 mM -0.2 +0.2 -0.5 -0.2 -0.2
carbon source L-Malic (C) -0.4 +0.3 -0.1 -0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -0.0 +0.2 -0.2 -0.3
carbon source succinate (C) +0.2 +0.1 -0.9 -0.3 +0.1
carbon source L-Rhamnose (C) -0.5 +0.4 -0.2 -0.2 -0.2
carbon source D-Ribose (C) +0.4 +0.0 -0.5 -0.5 +0.1
carbon source L-Arabinose (C) -0.4 +0.1 -0.4 +0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.5 -0.5 +0.1 -0.3
stress A22 0.02 mg/ml -0.4 +0.0 +0.4 -0.3 +0.2
carbon source L-Rhamnose (C) +0.4 +0.2 -0.1 -0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -0.3 +0.5 -0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 -0.3 +0.7 -0.1 +0.1
carbon source D-Galactose (C) +0.0 -0.0 -0.4 +0.4 +0.3
carbon source m-Inositol (C) +0.3 -0.1 +0.2 -0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.3 +0.5 +0.1 -0.0
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 +0.1 +0.6 +0.2 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.0 +0.4 +0.6 -0.1 -0.1
stress nitrite 20 mM +0.1 -0.1 +0.5 +0.0 +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.7 -0.4 +0.1 +0.2 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 +0.4 +0.5 +0.1 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.5 -0.0 +0.2 -0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.5 +0.3 +0.1 +1.1
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