Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS04735 and HSERO_RS04740 are separated by 562 nucleotidesHSERO_RS04740 and HSERO_RS04745 are separated by 83 nucleotidesHSERO_RS04745 and HSERO_RS04750 are separated by 126 nucleotidesHSERO_RS04750 and HSERO_RS04755 are separated by 112 nucleotides HSERO_RS04735: HSERO_RS04735 - phosphodiesterase, at 1,035,551 to 1,036,777 _RS04735 HSERO_RS04740: HSERO_RS04740 - dienelactone hydrolase, at 1,037,340 to 1,038,260 _RS04740 HSERO_RS04745: HSERO_RS04745 - ligand-gated channel protein, at 1,038,344 to 1,040,491 _RS04745 HSERO_RS04750: HSERO_RS04750 - Fis family transcriptional regulator, at 1,040,618 to 1,041,760 _RS04750 HSERO_RS04755: HSERO_RS04755 - hypothetical protein, at 1,041,873 to 1,042,067 _RS04755
Group Condition HSERO_RS04735 HSERO_RS04740 HSERO_RS04745 HSERO_RS04750 HSERO_RS04755
stress Lomefloxacin 0.012 mM -0.7 -0.4 -0.1 -0.4 N.D.
plant Control soil assay; outgrowth in LB -0.4 -0.7 -0.2 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.9 +0.1 -0.0 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.2 -0.5 -0.2 -0.1 N.D.
control NoPredeControl +0.0 -0.7 +0.1 +0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.1 +0.1 -0.3 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.5 +0.3 +0.1 N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.3 -0.6 +0.2 -0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -0.1 -0.2 +0.5 N.D.
carbon source D-Xylose (C) -0.1 -0.3 +0.3 +0.2 N.D.
carbon source D-Ribose (C) -0.2 +0.5 -0.4 +0.3 N.D.
carbon source L-Arabinose (C) -0.0 -0.4 +0.2 +0.3 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.1 +0.2 -0.3 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 -0.2 -0.1 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 +0.6 -0.2 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.3 -0.1 +0.7 N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.3 +0.4 +0.0 -0.2 N.D.
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM +0.2 +0.4 +0.1 -0.2 N.D.
carbon source L-Rhamnose (C) -0.2 +0.3 +0.2 +0.3 N.D.
carbon source D-Ribose (C) -0.2 +0.7 +0.0 +0.2 N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.1 +0.4 +0.4 -0.2 N.D.
carbon source Xylitol (C) -0.1 +0.3 +0.4 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +0.3 +0.0 -0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.0 +0.5 -0.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 -0.2 +0.2 +0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.2 -0.0 +0.3 N.D.
carbon source L-Arabinose (C) -0.1 +0.5 +0.3 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 +0.1 +0.0 +0.9 N.D.
carbon source D-Glucose (C) +0.2 +0.4 +0.2 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 +1.4 -0.1 +0.5 N.D.
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