Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS04550	HSERO_RS04555	HSERO_RS04560	HSERO_RS04565	HSERO_RS04570
carbon source	L-Arabinose (C)	-0.5	-0.2	-0.3	-0.4	-0.4
r2a control	R2A control	-0.5	-0.1	+0.1	-0.7	-0.6
carbon source	Xylitol (C)	-0.4	-1.0	-0.1	-0.2	-0.2
carbon source	D-Glucose (C)	+0.2	-0.6	-0.3	-0.7	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	-0.2	-0.4	-0.3	-0.3
carbon source	D-Sorbitol (C)	-0.4	-1.1	-0.1	-0.4	+0.3
carbon source	a-Ketoglutaric (C)	-0.5	-0.4	-0.3	-0.5	+0.0
nitrogen source	L-Proline (N)	-0.9	-0.4	+0.0	-0.3	+0.0
carbon source	D-Lactate (C)	-0.3	-0.6	-0.2	-0.5	+0.0
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.1	-0.3	-0.3	-0.7
stress	nitrate 200 mM	-0.8	-0.0	+0.2	-0.3	-0.4
carbon source	D-Galactose (C)	-0.5	-0.9	+0.2	-0.0	-0.1
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	-0.4	-0.4	-0.1	+0.2	-0.5
supernatant control	Vogels_fungal_media; pH 5.5	-1.0	+0.1	+0.3	-0.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.3	+0.0	-0.3	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+0.2	+0.2	-0.3	-0.4
stress	sodium fluoride 100 mM	-1.1	-0.2	+0.2	+0.2	+0.2
carbon source	Glycerol (C)	-1.0	-0.1	+0.0	-0.1	+0.4
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	-0.5	-0.1	-0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.5	-0.1	-0.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.2	+0.6	-0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.5	-0.6	+0.1	+0.0	-0.4
nitrogen source	Ammonium chloride (N); low aeration	+0.4	-0.5	-0.2	+0.3	-0.3
stress	nitrite 20 mM	-0.7	+0.7	-0.1	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	-0.1	+0.1	-0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.5	-0.3	-0.5	-0.0	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0	+0.5	+0.4	-0.0	-0.2
plant	Control soil assay; outgrowth in LB	+0.2	+0.4	+0.5	+0.7	+0.1
stress	Lomefloxacin 0.012 mM	+0.8	+0.6	+0.2	+0.5	+0.6
stress	Cisplatin 0.003 mg/ml	+0.6	+0.8	+1.3	+1.2	+1.2