Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS04530 and HSERO_RS04535 are separated by 40 nucleotidesHSERO_RS04535 and HSERO_RS04540 overlap by 1 nucleotidesHSERO_RS04540 and HSERO_RS04545 are separated by 87 nucleotidesHSERO_RS04545 and HSERO_RS04550 overlap by 1 nucleotides HSERO_RS04530: HSERO_RS04530 - hypothetical protein, at 991,775 to 992,149 _RS04530 HSERO_RS04535: HSERO_RS04535 - tail protein X, at 992,190 to 992,399 _RS04535 HSERO_RS04540: HSERO_RS04540 - head protein, at 992,399 to 992,890 _RS04540 HSERO_RS04545: HSERO_RS04545 - integrase, at 992,978 to 993,697 _RS04545 HSERO_RS04550: HSERO_RS04550 - capsid protein, at 993,697 to 994,740 _RS04550
Group Condition HSERO_RS04530 HSERO_RS04535 HSERO_RS04540 HSERO_RS04545 HSERO_RS04550
stress sodium fluoride 100 mM -0.0 -0.3 -0.2 -1.0 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -0.7 -0.3 -0.8 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 -0.9 +0.2 -0.3 -0.2
carbon source D-Mannose (C) -0.6 -0.5 -0.4 +0.0 -0.7
nitrogen source L-Proline (N) -0.6 +0.3 -0.4 -0.5 -0.9
carbon source pyruvate (C) -0.3 -0.5 -0.1 -0.9 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 -0.7 -0.2 -0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -0.9 -0.2 -0.8 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 -1.0 -0.7 -0.6 -0.2
carbon source Glycerol (C) -0.4 +0.1 -0.7 -0.6 -0.2
carbon source D-Ribose (C) +0.3 -0.4 -0.7 -0.6 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 -0.7 -0.2 +0.2 -0.4
carbon source D-Glucose (C) -1.0 -0.2 -0.7 +0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 -0.9 +0.3 -0.3 -0.6
carbon source Xylitol (C) -0.6 +0.1 -0.7 +0.3 -0.4
carbon source D-Xylose (C) -1.2 +0.4 -0.4 -0.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -0.8 -0.8 +0.4 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -0.7 -0.4 -0.2 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 -1.2 -0.0 -0.7 +1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.8 -0.1 +1.0 -0.2
carbon source L-Arabinose (C) +0.5 -0.4 -0.7 +0.7 -0.5
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.0 +0.8 -0.4 +0.5 -0.1
vitamin With vitamins t2 -0.6 -0.6 +0.1 +0.7 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.5 -0.4 +0.4 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 +1.1 -0.5 +0.9 -0.7
carbon source D-Sorbitol (C) -0.2 +0.2 -0.6 +1.4 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -0.6 -0.0 +1.7 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 +0.7 +0.1 +0.8 +0.5
stress Lomefloxacin 0.012 mM +1.2 +1.5 +0.2 +0.7 +0.8
stress Cisplatin 0.003 mg/ml +1.2 +0.9 +1.3 +1.1 +0.6
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