Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS04415 and HSERO_RS04420 are separated by 313 nucleotidesHSERO_RS04420 and HSERO_RS04425 are separated by 121 nucleotidesHSERO_RS04425 and HSERO_RS04430 are separated by 0 nucleotidesHSERO_RS04430 and HSERO_RS04435 overlap by 1 nucleotides HSERO_RS04415: HSERO_RS04415 - hypothetical protein, at 975,053 to 975,295 _RS04415 HSERO_RS04420: HSERO_RS04420 - DNA-binding transcriptional regulator, at 975,609 to 976,046 _RS04420 HSERO_RS04425: HSERO_RS04425 - phage-encoded membrane protein, at 976,168 to 976,833 _RS04425 HSERO_RS04430: HSERO_RS04430 - phage late control protein, at 976,834 to 978,063 _RS04430 HSERO_RS04435: HSERO_RS04435 - oxidoreductase, at 978,063 to 978,590 _RS04435
Group Condition HSERO_RS04415 HSERO_RS04420 HSERO_RS04425 HSERO_RS04430 HSERO_RS04435
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 N.D. -0.1 -0.5 -1.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.0 N.D. -0.0 -0.5 -1.2
carbon source L-Arabinose (C) +0.1 N.D. -0.0 -0.1 -1.6
carbon source L-Lactate (C) +0.0 N.D. -0.1 -0.2 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 N.D. -0.4 -0.5 -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 N.D. -0.1 -0.4 -0.5
carbon source D-Ribose (C) -0.2 N.D. -0.0 -0.2 -0.9
carbon source D-Glucose-6-Phosphate (C) -0.0 N.D. +0.0 -0.3 -1.0
carbon source D-Glucose-6-Phosphate (C) +0.1 N.D. +0.1 -0.1 -1.2
supernatant control Vogels_fungal_media; pH 5.5 +0.2 N.D. +0.0 -0.2 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 N.D. -0.2 +0.0 -0.9
control NoPredeControl +0.2 N.D. -0.1 +0.0 -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 N.D. +0.1 -0.1 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. +0.0 -0.2 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 N.D. +0.1 +0.1 -1.1
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.1 N.D. -0.0 +0.1 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 N.D. -0.1 +0.2 -0.6
carbon source L-Rhamnose (C) -0.2 N.D. +0.2 -0.2 -0.6
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X -0.1 N.D. +0.0 +0.2 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 N.D. -0.4 +0.3 -0.4
carbon source D-Glucose (C) -0.4 N.D. -0.0 +0.2 -0.6
stress sodium fluoride 100 mM +0.0 N.D. +0.1 +0.2 -0.9
carbon source D-Xylose (C) +0.1 N.D. -0.2 +0.3 -0.6
stress A22 0.02 mg/ml -0.0 N.D. +0.1 +0.4 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 N.D. -0.1 -0.0 -0.6
stress Fusidic 0.025 mg/ml +0.2 N.D. +0.2 +0.5 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 N.D. -0.4 -0.3 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 N.D. +0.1 +0.1 +1.3
stress Lomefloxacin 0.012 mM +0.0 N.D. +0.0 +0.8 +0.8
stress Cisplatin 0.003 mg/ml +0.8 N.D. +0.1 +1.0 +0.0
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