Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS04365 and HSERO_RS04370 are separated by 55 nucleotidesHSERO_RS04370 and HSERO_RS04375 are separated by 1718 nucleotidesHSERO_RS04375 and HSERO_RS04380 are separated by 1382 nucleotidesHSERO_RS04380 and HSERO_RS04385 are separated by 139 nucleotides HSERO_RS04365: HSERO_RS04365 - RNA polymerase sigma factor RpoD, at 965,140 to 967,692 _RS04365 HSERO_RS04370: HSERO_RS04370 - tRNA-Met, at 967,748 to 967,826 _RS04370 HSERO_RS04375: HSERO_RS04375 - hypothetical protein, at 969,545 to 970,003 _RS04375 HSERO_RS04380: HSERO_RS04380 - hypothetical protein, at 971,386 to 971,703 _RS04380 HSERO_RS04385: HSERO_RS04385 - replication protein, at 971,843 to 973,894 _RS04385
Group Condition HSERO_RS04365 HSERO_RS04370 HSERO_RS04375 HSERO_RS04380 HSERO_RS04385
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.3 -0.3 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.3 -0.4 -0.4
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -0.3 -0.5 -0.1
carbon source L-Arabinose (C) N.D. N.D. -0.0 -0.2 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.1 -0.5 +0.2
carbon source Glycerol (C) N.D. N.D. +0.1 +0.1 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.1 -0.7 +0.5
carbon source Carbon source Phenylacetic 5 mM N.D. N.D. -0.1 -0.4 +0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. +0.2 -0.7 +0.2
agar plate interaction control Taped volatile agar plate with no fungus N.D. N.D. +0.0 +0.3 -0.5
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. +0.2 -0.5 +0.1
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.1 +0.3 -0.3
carbon source Xylitol (C) N.D. N.D. +0.1 +0.2 -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. +0.1 -0.4 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.4 +0.2 +0.3
carbon source pyruvate (C) N.D. N.D. -0.0 +0.5 -0.4
carbon source L-Rhamnose (C) N.D. N.D. -0.1 +0.6 -0.4
stress Lomefloxacin 0.012 mM N.D. N.D. +0.9 -0.5 -0.2
stress nitrate 200 mM N.D. N.D. -0.2 +0.0 +0.5
carbon source succinate (C) N.D. N.D. +0.1 +0.5 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.2 +0.5 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.2 +0.1 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.2 +0.7 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. N.D. +0.3 -0.2 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.1 +0.4 +0.4
stress Cisplatin 0.003 mg/ml N.D. N.D. +1.0 -0.4 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.1 +0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.1 +0.7 +0.1
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. N.D. +0.1 +0.3 +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. +0.2 +0.2 +0.5
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