Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS04190 and HSERO_RS04195 are separated by 117 nucleotidesHSERO_RS04195 and HSERO_RS04200 are separated by 447 nucleotidesHSERO_RS04200 and HSERO_RS04205 are separated by 345 nucleotidesHSERO_RS04205 and HSERO_RS04210 are separated by 104 nucleotides HSERO_RS04190: HSERO_RS04190 - DNA mismatch repair protein, at 916,548 to 918,473 _RS04190 HSERO_RS04195: HSERO_RS04195 - methyl-accepting chemotaxis protein, at 918,591 to 920,564 _RS04195 HSERO_RS04200: HSERO_RS04200 - diguanylate cyclase, at 921,012 to 923,954 _RS04200 HSERO_RS04205: HSERO_RS04205 - membrane protein, at 924,300 to 924,962 _RS04205 HSERO_RS04210: HSERO_RS04210 - N-acetylmuramoyl-L-alanine amidase, at 925,067 to 926,428 _RS04210
Group Condition HSERO_RS04190 HSERO_RS04195 HSERO_RS04200 HSERO_RS04205 HSERO_RS04210
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -1.1 -0.9 -0.2 +0.0 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.1 +0.1 -0.3 -0.2 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.8 -0.1 -0.3 -0.1 N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days -0.6 -0.3 -0.5 +0.2 N.D.
vitamin No vitamins t2 -1.0 +0.2 +0.1 -0.4 N.D.
plant Control soil assay; outgrowth in LB -0.9 -0.4 +0.0 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 +0.0 +0.1 -0.3 N.D.
vitamin With vitamins t2 -0.8 -0.3 +0.1 +0.3 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 +0.0 -0.4 +0.3 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.8 -0.2 +0.3 +0.1 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 -1.0 +0.1 +0.3 +0.0 N.D.
carbon source L-Asparagine (C) -0.8 -0.0 -0.1 +0.4 N.D.
carbon source L-Arabinose (C) -0.8 +0.6 -0.1 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.9 -0.0 +0.0 +0.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.8 +0.2 -0.1 +0.3 N.D.
stress Cobalt chloride 0.2 mM -1.2 +0.1 +0.0 +0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.6 +0.4 -0.2 +0.1 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.7 -0.1 -0.1 +0.6 N.D.
control NoPredeControl -0.7 +0.3 +0.2 +0.2 N.D.
carbon source L-Glutamine (C) -0.6 +0.1 +0.3 +0.5 N.D.
stress Nickel (II) chloride 0.6 mM -0.8 +0.2 +0.2 +0.5 N.D.
stress Cisplatin 0.003 mg/ml -0.7 +0.0 +0.3 +0.7 N.D.
stress nitrate 200 mM -0.6 +0.2 +0.1 +0.7 N.D.
carbon source L-Malic (C) -0.5 +0.1 +0.3 +0.5 N.D.
stress Sisomicin 0.125 mg/ml +0.3 -0.2 +0.2 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 +0.3 +0.0 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +0.4 +0.3 +0.3 N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +1.3 +0.3 +0.1 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 +0.6 +0.4 +0.7 N.D.
stress Lomefloxacin 0.012 mM +0.5 -0.0 +0.1 +1.4 N.D.
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