Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS04070 and HSERO_RS04075 overlap by 4 nucleotidesHSERO_RS04075 and HSERO_RS04080 overlap by 20 nucleotidesHSERO_RS04080 and HSERO_RS04085 are separated by 228 nucleotidesHSERO_RS04085 and HSERO_RS04090 are separated by 162 nucleotides HSERO_RS04070: HSERO_RS04070 - hypothetical protein, at 890,862 to 891,359 _RS04070 HSERO_RS04075: HSERO_RS04075 - type IV prepilin PilV protein, at 891,356 to 892,759 _RS04075 HSERO_RS04080: HSERO_RS04080 - invasion protein, at 892,740 to 893,237 _RS04080 HSERO_RS04085: HSERO_RS04085 - twitching motility protein PilT, at 893,466 to 894,563 _RS04085 HSERO_RS04090: HSERO_RS04090 - molecular chaperone Tir, at 894,726 to 895,127 _RS04090
Group Condition HSERO_RS04070 HSERO_RS04075 HSERO_RS04080 HSERO_RS04085 HSERO_RS04090
plant Control soil assay; outgrowth in LB -0.4 -0.7 +0.0 N.D. -0.4
carbon source D-Glucose (C) -0.8 +0.3 -0.2 N.D. +0.4
carbon source D,L-Malic Acid (C) -0.6 -0.2 +0.2 N.D. +0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 -0.3 +0.1 N.D. +0.5
carbon source Carbon source Deoxyribonucleic from herring sperm 5 mg/mL -0.6 +0.2 +0.2 N.D. -0.1
stress Cobalt chloride 0.2 mM +0.5 -0.2 -0.0 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 +0.2 -0.0 N.D. +0.3
nitrogen source Ammonium chloride (N); high aeration +0.2 -0.7 +0.1 N.D. +0.3
carbon source D,L-Lactate (C) -0.2 +0.3 -0.3 N.D. +0.4
carbon source D-Xylose (C) -0.2 -0.1 -0.1 N.D. +0.8
stress sodium fluoride 100 mM +0.5 +0.6 -0.1 N.D. -0.5
carbon source L-Fucose (C) +0.5 -0.4 -0.0 N.D. +0.5
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.1 -0.4 -0.1 N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 +0.5 +0.6 N.D. -0.3
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.3 +0.1 +0.8 N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +0.3 -0.2 N.D. +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.4 +0.2 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.5 -0.1 N.D. +0.5
carbon source D-Glucose (C) +0.5 -0.3 +0.2 N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.1 -0.1 N.D. +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.0 +0.2 N.D. +1.1
supernatant control Vogels_fungal_media; pH 5.5 +0.5 -0.2 +0.2 N.D. +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.1 +0.1 N.D. +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.1 +0.0 N.D. +1.3
supernatant control Vogels_fungal_media 0.1X +0.2 +0.0 +0.4 N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +0.1 +0.3 N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 +0.6 +0.2 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.4 +0.1 +0.0 N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +0.5 -0.0 N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +1.1 +0.1 N.D. +0.1
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