Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS03925	HSERO_RS03930	HSERO_RS03935	HSERO_RS03940	HSERO_RS03945
stress	Sisomicin 0.125 mg/ml	-4.4	-0.2	-0.0	+0.5	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-1.4	-0.2	-0.7	-0.5	N.D.
carbon source	D-Lactate (C)	-1.8	-0.2	+0.3	-0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.5	-0.1	+0.1	-0.3	N.D.
stress	Cisplatin 0.003 mg/ml	-1.2	-0.2	-0.2	-0.0	N.D.
carbon source	m-Inositol (C)	-0.9	+0.4	+0.0	-0.4	N.D.
stress	Lomefloxacin 0.012 mM	-1.3	+0.0	-0.1	+0.5	N.D.
carbon source	m-Inositol (C)	-0.9	-0.3	-0.1	+0.5	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.5	-0.6	-0.2	N.D.
carbon source	L-Fucose (C)	-0.8	+0.4	-0.3	+0.5	N.D.
carbon source	L-Malic (C)	-0.8	+0.3	+0.3	+0.1	N.D.
stress	nitrite 20 mM	+0.7	-0.4	-0.4	+0.1	N.D.
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.1	+0.7	-0.0	-0.7	N.D.
plant	Control soil assay; outgrowth in LB	+0.6	-0.5	-0.3	+0.2	N.D.
stress	Cobalt chloride 0.2 mM	-0.6	-0.1	-0.0	+0.8	N.D.
stress	Fusidic 0.025 mg/ml	+0.9	-0.8	-0.1	+0.3	N.D.
carbon source	Xylitol (C)	-0.6	+0.4	+0.1	+0.5	N.D.
nitrogen source	Ammonium chloride (N); high aeration	+0.9	+0.0	+0.3	-0.4	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.2	-0.2	+0.5	N.D.
control	NoPredeControl	+1.5	-0.3	-0.4	+0.0	N.D.
carbon source	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL	+0.9	-0.1	-0.2	+0.4	N.D.
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	+1.2	-0.1	+0.2	-0.2	N.D.
carbon source	pyruvate (C)	+0.9	+0.4	+0.2	-0.2	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.7	-0.1	+0.1	-0.0	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	+0.2	+0.4	+0.4	N.D.
agar plate interaction control	Taped volatile agar plate with no fungus	+0.9	+0.1	+0.3	+0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+1.7	+0.0	+0.2	N.D.
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.4	+0.5	+1.1	-0.2	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+2.7	-0.3	+0.1	-0.4	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+1.3	+1.0	+0.3	N.D.