Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS03775 and HSERO_RS03780 are separated by 27 nucleotidesHSERO_RS03780 and HSERO_RS03785 overlap by 4 nucleotidesHSERO_RS03785 and HSERO_RS03790 are separated by 30 nucleotidesHSERO_RS03790 and HSERO_RS03795 are separated by 39 nucleotides HSERO_RS03775: HSERO_RS03775 - cell envelope biogenesis protein OmpA, at 831,617 to 832,408 _RS03775 HSERO_RS03780: HSERO_RS03780 - type VI secretion protein, at 832,436 to 833,422 _RS03780 HSERO_RS03785: HSERO_RS03785 - type VI secretion protein VasK, at 833,419 to 837,294 _RS03785 HSERO_RS03790: HSERO_RS03790 - hypothetical protein, at 837,325 to 838,851 _RS03790 HSERO_RS03795: HSERO_RS03795 - hypothetical protein, at 838,891 to 839,148 _RS03795
Group Condition HSERO_RS03775 HSERO_RS03780 HSERO_RS03785 HSERO_RS03790 HSERO_RS03795
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 -4.7 +0.6 +1.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 -3.1 +0.4 +0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 -3.5 +0.5 +0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -3.6 +0.7 +1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -2.9 +0.4 +0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.0 -3.2 +0.4 +1.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 -3.6 +0.6 +1.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 -2.9 +0.5 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -2.2 +0.1 +0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 -3.3 +1.0 +0.9 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -2.7 +0.4 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -2.9 +0.4 +1.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 -2.4 +0.7 +0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -2.0 +0.6 +0.9 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -2.4 +0.5 +1.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -2.3 +0.7 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 -2.4 +1.1 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 -2.4 +0.5 +1.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 -2.4 +0.5 +0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 -2.5 +0.3 +1.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -1.7 +0.5 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 -2.5 +0.4 +1.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 -2.7 +0.4 +1.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 -1.8 +0.4 +0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 -1.7 +0.5 +1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 -2.4 +0.7 +1.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 -1.8 +0.3 +1.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.3 -2.1 +0.6 +1.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 -1.7 +0.8 +1.3 N.D.
stress nitrate 200 mM +0.7 -0.4 -0.1 +1.2 N.D.
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