Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS03625 and HSERO_RS03630 are separated by 381 nucleotidesHSERO_RS03630 and HSERO_RS03635 are separated by 62 nucleotidesHSERO_RS03635 and HSERO_RS03640 are separated by 97 nucleotidesHSERO_RS03640 and HSERO_RS03645 are separated by 79 nucleotides HSERO_RS03625: HSERO_RS03625 - nicotinamidase-like protein, at 791,814 to 792,422 _RS03625 HSERO_RS03630: HSERO_RS03630 - fructose transporter, at 792,804 to 793,421 _RS03630 HSERO_RS03635: HSERO_RS03635 - D-mannose ABC transporter, substrate-binding component (from data), at 793,484 to 794,434 _RS03635 HSERO_RS03640: HSERO_RS03640 - D-mannose ABC transporter, ATPase component (from data), at 794,532 to 796,037 _RS03640 HSERO_RS03645: HSERO_RS03645 - D-mannose ABC transporter, permease component (from data), at 796,117 to 797,136 _RS03645
Group Condition HSERO_RS03625 HSERO_RS03630 HSERO_RS03635 HSERO_RS03640 HSERO_RS03645
carbon source D-Mannose (C) +0.7 -4.7 -5.2 -4.7 -3.4
carbon source L-mannose (C) +1.0 -5.3 -4.7 -4.4 -2.9
carbon source L-mannose (C) +0.9 -4.5 -4.9 -4.3 -2.9
carbon source D-Mannose (C) +0.9 -3.9 -2.1 -3.6 -2.3
plant Control soil assay; outgrowth in LB -0.2 +0.1 -1.3 -0.4 -0.3
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X -0.4 +0.1 -1.1 -0.1 -0.1
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.2 -0.0 -1.4 +0.0 +0.1
r2a control R2A control +0.2 +0.1 -1.3 -0.3 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.0 -1.7 +0.4 -0.0
carbon source L-Fucose (C) +0.5 -0.0 -0.9 +0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 +0.2 -0.8 -0.3 +0.4
carbon source Xylitol (C) +1.0 -0.3 -0.5 +0.3 -0.2
carbon source D-Lactate (C) +0.7 -0.5 +0.4 +0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.8 +0.6 -0.8 -0.1 +0.0
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.2 +0.2 -0.6 +0.3 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -0.1 +1.2 -0.0 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 +0.1 -0.5 -0.1 -0.1
carbon source D-Glucose-6-Phosphate (C) +0.6 -0.0 +0.9 -0.1 -0.2
carbon source Xylitol (C) +0.7 +0.2 +0.7 -0.1 -0.4
carbon source a-Ketoglutaric (C) +0.5 -0.3 +0.6 +0.3 +0.0
carbon source D-Ribose (C) +1.1 -0.2 +0.6 -0.2 -0.1
carbon source succinate (C) +0.6 -0.1 +0.8 +0.3 -0.1
carbon source D-Glucose-6-Phosphate (C) +0.8 -0.0 +0.6 +0.2 -0.2
stress Lomefloxacin 0.012 mM +0.5 -0.1 +1.0 -0.1 +0.0
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.8 +0.2 -0.2 +0.4 +0.2
carbon source D-Lactate (C) +0.8 +0.0 +0.7 -0.0 -0.2
carbon source L-Arabinose (C) +1.0 -0.0 +0.5 +0.2 -0.0
carbon source m-Inositol (C) +0.6 -0.2 +0.8 +0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 +0.9 -0.1 +0.5 +0.3
carbon source D-Glucose (C) +0.3 +0.3 +1.4 +0.3 +0.1
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