Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

Group	Condition	HSERO_RS03545	HSERO_RS03550	HSERO_RS03555	HSERO_RS03560	HSERO_RS03565
carbon source	Glycerol (C)	-0.1	-2.6	+0.1	+0.0	-0.9
carbon source	D-Mannose (C)	-0.2	-2.2	-0.8	+0.3	-0.4
carbon source	D-Glucose (C)	-0.6	-1.5	-0.3	-0.2	-0.2
stress	Sisomicin 0.125 mg/ml	-0.2	-0.4	-0.3	-0.3	-1.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.1	-1.1	+0.1	-0.5	-0.9
carbon source	D-Mannose (C)	-0.1	-0.9	-1.4	+0.1	+0.2
carbon source	Glycerol (C)	-0.5	-1.0	+0.0	-0.4	-0.1
stress	Lomefloxacin 0.012 mM	-0.0	-0.9	-0.3	-0.1	-0.5
plant	Control soil assay; outgrowth in LB	+0.2	-1.2	-0.0	-0.2	-0.3
supernatant control	Vogels_fungal_media 0.1X	+0.1	-1.4	+0.0	+0.1	-0.3
carbon source	L-Proline (C)	+0.5	-0.7	-0.1	-0.1	-0.8
stress	nitrate 200 mM	+0.3	-0.2	+0.1	-0.7	-0.7
stress	Cobalt chloride 0.2 mM	+0.0	-0.2	+0.4	+0.0	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	-1.4	+0.3	-0.2	+0.4
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.4	-1.0	+0.1	-0.4	+0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.1	-1.1	+0.1	-0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	+0.3	+0.6	-0.9	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.8	-0.1	-0.8	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.6	+0.2	-0.8	-0.1
stress	Fusidic 0.025 mg/ml	-0.4	+0.5	+0.1	+0.1	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.5	+0.8	-0.3	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+0.3	+0.2	-0.9	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.6	+0.7	-0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+1.1	+0.0	-0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.6	+0.2	-0.3	-0.2
carbon source	succinate (C)	+0.5	+0.7	-0.4	-0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	+1.2	+0.2	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	-0.1	+1.7	-0.1	+0.0
carbon source	L-Fucose (C)	+0.1	+0.7	+0.9	+0.1	+0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.6	+0.4	+0.2	+0.8	+0.6