Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS03535 and HSERO_RS03540 are separated by 26 nucleotidesHSERO_RS03540 and HSERO_RS03545 are separated by 197 nucleotidesHSERO_RS03545 and HSERO_RS03550 are separated by 201 nucleotidesHSERO_RS03550 and HSERO_RS03555 are separated by 104 nucleotides HSERO_RS03535: HSERO_RS03535 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 770,303 to 771,325 _RS03535 HSERO_RS03540: HSERO_RS03540 - dimethyladenosine transferase, at 771,352 to 772,134 _RS03540 HSERO_RS03545: HSERO_RS03545 - hypothetical protein, at 772,332 to 772,709 _RS03545 HSERO_RS03550: HSERO_RS03550 - glyoxalase I, at 772,911 to 773,315 _RS03550 HSERO_RS03555: HSERO_RS03555 - chloride channel protein, at 773,420 to 774,703 _RS03555
Group Condition HSERO_RS03535 HSERO_RS03540 HSERO_RS03545 HSERO_RS03550 HSERO_RS03555
carbon source Glycerol (C) N.D. -3.5 -0.1 -2.6 +0.1
carbon source D-Mannose (C) N.D. -2.4 -0.1 -0.9 -1.4
carbon source D-Xylose (C) N.D. -3.1 -0.4 -0.6 -0.3
carbon source D-Mannose (C) N.D. -1.0 -0.2 -2.2 -0.8
carbon source D-Galactose (C) N.D. -3.0 -0.4 -0.5 -0.4
carbon source Xylitol (C) N.D. -3.1 -0.0 -0.6 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -2.9 -0.2 -1.4 +0.3
carbon source D-Glucose (C) N.D. -1.6 -0.6 -1.5 -0.3
carbon source L-Malic (C) N.D. -3.7 +0.2 -0.5 +0.1
carbon source D-Glucose-6-Phosphate (C) N.D. -2.4 -0.5 -0.2 -0.4
stress Cobalt chloride 0.2 mM N.D. -3.7 +0.0 -0.2 +0.4
stress Cisplatin 0.003 mg/ml N.D. -3.5 -0.2 +0.1 +0.0
carbon source D-Galacturonic Acid (C) N.D. -3.3 +0.3 -0.1 -0.5
carbon source D-Galacturonic Acid (C) N.D. -3.4 +0.1 -0.0 -0.0
stress nitrate 200 mM N.D. -3.6 +0.3 -0.2 +0.1
carbon source D-Lactate (C) N.D. -3.2 -0.3 +0.6 -0.3
carbon source D-Glucose (C) N.D. -3.1 +0.1 -0.0 -0.1
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. -2.1 -0.5 -0.3 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -2.9 -0.3 -0.0 +0.2
carbon source m-Inositol (C) N.D. -2.9 -0.2 +0.3 -0.1
nutrient L-Histidine N.D. -2.7 -0.1 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -3.0 -0.2 +0.2 +0.0
carbon source L-mannose (C) N.D. -2.4 +0.2 -0.4 -0.3
carbon source succinate (C) N.D. -2.8 +0.1 -0.0 -0.2
nutrient L-Histidine N.D. -3.1 +0.1 +0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -3.1 +0.7 -0.2 -0.1
carbon source succinate (C) N.D. -3.4 +0.5 +0.7 -0.4
carbon source a-Ketoglutaric (C) N.D. -2.5 +0.3 +0.2 -0.3
stress sodium fluoride 100 mM N.D. -3.4 +0.2 +0.7 +0.3
carbon source D-Galactose (C) N.D. -3.1 +0.4 +0.2 +0.3
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