Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS03330	HSERO_RS03335	HSERO_RS03340	HSERO_RS03345	HSERO_RS03350
micoeukaryotes	C.elegans, mixed culture-2	-0.4	-0.0	-0.7	N.D.	-1.7
stress	nitrite 20 mM	-0.2	+0.2	+0.3	N.D.	-3.0
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-1.0	+0.0	-0.7	N.D.	-0.9
carbon source	Glycerol (C)	+0.1	+0.0	-0.4	N.D.	-2.3
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-1.2	-0.1	-0.3	N.D.	-0.5
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	-0.4	-0.1	-0.4	N.D.	-1.3
carbon source	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM	-0.1	-0.2	+0.1	N.D.	-1.7
carbon source	Glycerol (C)	+0.5	+0.0	+0.2	N.D.	-2.6
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.3	-0.2	-0.8	N.D.	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.4	-0.5	N.D.	-0.5
carbon source	L-mannose (C)	-0.2	-0.3	+0.1	N.D.	-1.0
carbon source	D-Xylose (C)	+0.4	-0.2	-0.4	N.D.	-0.9
carbon source	D-Ribose (C)	+0.4	+0.1	+0.1	N.D.	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.1	-0.1	+0.1	N.D.	+0.8
stress	Sisomicin 0.125 mg/ml	+0.3	-0.2	+0.5	N.D.	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.2	-0.5	-0.3	N.D.	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.8	-0.2	+0.4	N.D.	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8	+0.1	+0.4	N.D.	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+1.1	+0.3	N.D.	-0.6
carbon source	D,L-Lactate (C)	+0.1	-0.3	-0.1	N.D.	+1.2
carbon source	D,L-Lactate (C)	-0.1	-0.3	+0.2	N.D.	+1.1
carbon source	D-Mannitol (C)	-0.3	+0.0	-0.2	N.D.	+1.6
carbon source	D-Galactose (C)	-0.3	+0.0	+0.2	N.D.	+1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.0	-0.1	N.D.	+1.8
carbon source	D-Galactose (C)	-0.1	-0.0	+0.6	N.D.	+1.1
carbon source	D-Gluconic Acid (C)	-0.0	+0.3	-0.1	N.D.	+1.5
carbon source	Xylitol (C)	+0.0	-0.2	-0.0	N.D.	+2.2
carbon source	D-Gluconic Acid (C)	+0.6	-0.2	-0.0	N.D.	+1.7
carbon source	D-Sorbitol (C)	+0.1	+0.2	+0.3	N.D.	+1.6
carbon source	Xylitol (C)	-0.0	+0.1	+0.1	N.D.	+2.2