Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS03260 and HSERO_RS03265 are separated by 2 nucleotidesHSERO_RS03265 and HSERO_RS03270 are separated by 420 nucleotidesHSERO_RS03270 and HSERO_RS03275 are separated by 359 nucleotidesHSERO_RS03275 and HSERO_RS03280 are separated by 535 nucleotides HSERO_RS03260: HSERO_RS03260 - histidine kinase, at 717,317 to 717,925 _RS03260 HSERO_RS03265: HSERO_RS03265 - transcription regulator protein, at 717,928 to 719,556 _RS03265 HSERO_RS03270: HSERO_RS03270 - protein RecA, at 719,977 to 721,032 _RS03270 HSERO_RS03275: HSERO_RS03275 - regulatory protein RecX, at 721,392 to 721,856 _RS03275 HSERO_RS03280: HSERO_RS03280 - malate--CoA ligase subunit beta, at 722,392 to 723,552 _RS03280
Group Condition HSERO_RS03260 HSERO_RS03265 HSERO_RS03270 HSERO_RS03275 HSERO_RS03280
stress Cisplatin 0.003 mg/ml +0.2 -0.2 -2.6 -4.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 -0.6 -5.2 -0.5 N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -2.4 -2.2 -0.8 -0.3 N.D.
micoeukaryotes C.elegans, mixed culture-2 -2.6 -2.1 -0.4 -0.5 N.D.
stress Lomefloxacin 0.012 mM +0.4 +0.8 -2.9 -3.1 N.D.
stress Cobalt chloride 0.2 mM +0.0 +0.4 -4.1 -1.1 N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days -1.2 -2.4 -0.7 -0.2 N.D.
carbon source L-Glutamine (C) -0.4 -0.2 -2.7 -1.0 N.D.
carbon source L-Fucose (C) +0.9 +0.3 -4.6 -0.6 N.D.
carbon source L-Fucose (C) -0.1 +0.1 -3.4 -0.4 N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -1.4 -1.8 -0.5 -0.2 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 -1.2 -1.9 -0.3 N.D.
carbon source D-Ribose (C) +0.9 -0.7 -3.6 -0.6 N.D.
carbon source D-Glucose-6-Phosphate (C) +0.3 -0.9 -2.7 -0.7 N.D.
carbon source L-Glutamine (C) +0.5 -0.5 -2.8 -0.9 N.D.
carbon source L-Asparagine (C) +0.2 -0.7 -2.4 -0.7 N.D.
carbon source L-Arabinose (C) +0.4 -1.2 -1.9 -0.8 N.D.
carbon source L-Malic (C) +0.2 +0.4 -2.2 -1.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.9 +0.1 -3.4 -0.6 N.D.
carbon source D-Galactose (C) +0.3 -0.6 -2.8 +0.2 N.D.
carbon source L-Malic (C) +0.6 -0.1 -2.0 -1.2 N.D.
carbon source L-Lactate (C) +0.8 -0.1 -2.7 -0.6 N.D.
carbon source D-Lactate (C) +0.7 +0.1 -2.5 -0.7 N.D.
carbon source L-Rhamnose (C) +0.8 +0.1 -2.4 -0.8 N.D.
carbon source D-Ribose (C) +1.0 -0.3 -2.2 -0.5 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.9 +0.6 -1.9 -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 +0.3 -2.2 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 +0.3 -2.3 -0.5 N.D.
stress Thallium(I) acetate 0.001 mg/ml +0.7 +0.7 -1.9 -0.7 N.D.
agar plate interaction control Taped volatile agar plate with no fungus +1.3 +0.5 -1.9 -0.3 N.D.
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