Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS03185 and HSERO_RS03190 are separated by 75 nucleotidesHSERO_RS03190 and HSERO_RS03195 are separated by 266 nucleotidesHSERO_RS03195 and HSERO_RS03200 are separated by 194 nucleotidesHSERO_RS03200 and HSERO_RS03205 are separated by 93 nucleotides HSERO_RS03185: HSERO_RS03185 - cupin, at 697,270 to 697,713 _RS03185 HSERO_RS03190: HSERO_RS03190 - glutathione S-transferase, at 697,789 to 698,445 _RS03190 HSERO_RS03195: HSERO_RS03195 - poly(3-hydroxybutyrate) depolymerase, at 698,712 to 699,938 _RS03195 HSERO_RS03200: HSERO_RS03200 - IMP dehydrogenase, at 700,133 to 703,519 _RS03200 HSERO_RS03205: HSERO_RS03205 - hypothetical protein, at 703,613 to 706,114 _RS03205
Group Condition HSERO_RS03185 HSERO_RS03190 HSERO_RS03195 HSERO_RS03200 HSERO_RS03205
plant Control soil assay; outgrowth in LB N.D. -1.5 -0.1 -0.1 -0.0
nutrient L-Serine N.D. -0.8 +0.1 -0.2 -0.3
plant Control soil assay; outgrowth in LB N.D. -1.6 +0.3 +0.3 -0.1
vitamin No vitamins t2 N.D. -1.1 -0.1 +0.1 -0.0
nutrient L-Histidine N.D. -0.7 +0.3 -0.1 -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. -1.2 +0.1 -0.1 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.9 +0.1 -0.1 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.6 +0.1 -0.1 -0.3
nutrient L-Serine N.D. -0.6 +0.2 -0.0 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.8 +0.2 +0.0 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.0 +0.0 +0.2 +0.2
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. -0.8 +0.1 -0.1 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.9 +0.2 -0.0 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -0.6 +0.0 -0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.8 +0.3 +0.2 +0.0
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.8 -0.1 +0.1 -0.6
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. +0.7 -0.2 +0.2 -0.3
carbon source D-Glucose-6-Phosphate (C) N.D. +0.7 -0.3 +0.0 -0.1
stress Sisomicin 0.125 mg/ml N.D. +0.6 -0.4 +0.0 +0.3
stress Lomefloxacin 0.012 mM N.D. +0.8 -0.4 -0.1 +0.3
carbon source L-Lactate (C) N.D. +0.8 +0.2 -0.0 -0.3
carbon source Carbon source Phenylacetic 5 mM N.D. +0.6 -0.2 +0.1 +0.2
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days N.D. +1.4 -0.1 -0.2 -0.4
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. +1.0 +0.0 -0.0 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.5 +0.5 +0.1 -0.1
nitrogen source L-Glutamic (N); high aeration N.D. +1.1 -0.1 +0.0 -0.0
carbon source D-Ribose (C) N.D. +0.9 +0.1 -0.0 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +1.0 +0.1 +0.1 -0.1
micoeukaryotes Acanthamoeba sp., muxed culture-2 N.D. +0.7 +0.3 +0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.8 -0.0 -0.0 +0.7
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