Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS03045 and HSERO_RS03050 are separated by 71 nucleotidesHSERO_RS03050 and HSERO_RS03055 are separated by 36 nucleotidesHSERO_RS03055 and HSERO_RS03060 are separated by 95 nucleotidesHSERO_RS03060 and HSERO_RS03065 are separated by 44 nucleotides HSERO_RS03045: HSERO_RS03045 - HrcA family transcriptional regulator, at 665,396 to 666,424 _RS03045 HSERO_RS03050: HSERO_RS03050 - hydrolase, at 666,496 to 667,230 _RS03050 HSERO_RS03055: HSERO_RS03055 - inorganic polyphosphate/ATP-NAD kinase, at 667,267 to 668,184 _RS03055 HSERO_RS03060: HSERO_RS03060 - DNA repair protein, at 668,280 to 669,926 _RS03060 HSERO_RS03065: HSERO_RS03065 - ferrochelatase, at 669,971 to 671,080 _RS03065
Group Condition HSERO_RS03045 HSERO_RS03050 HSERO_RS03055 HSERO_RS03060 HSERO_RS03065
stress Lomefloxacin 0.012 mM -1.8 -0.3 N.D. -1.3 N.D.
carbon source D-Glucose-6-Phosphate (C) -1.6 -0.2 N.D. -0.7 N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -1.3 -0.1 N.D. -1.2 N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -1.4 -0.1 N.D. -0.8 N.D.
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -1.3 -0.3 N.D. -0.7 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.0 +0.0 N.D. -2.2 N.D.
stress Cisplatin 0.003 mg/ml -0.1 +0.2 N.D. -2.2 N.D.
carbon source L-mannose (C) -0.8 -0.1 N.D. -1.2 N.D.
stress Sisomicin 0.125 mg/ml -1.8 -0.2 N.D. -0.1 N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -1.3 -0.1 N.D. -0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.4 -0.1 N.D. -1.6 N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days -1.4 +0.1 N.D. -0.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.2 +0.2 N.D. -1.9 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.1 N.D. -1.8 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.2 N.D. -1.8 N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -1.5 -0.0 N.D. -0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.6 -0.1 N.D. -1.2 N.D.
carbon source D-Mannitol (C) -0.5 -0.2 N.D. -1.1 N.D.
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -1.3 -0.1 N.D. -0.3 N.D.
carbon source D-Glucose-6-Phosphate (C) -1.3 +0.1 N.D. -0.5 N.D.
carbon source D-Glucose (C) -1.4 -0.4 N.D. +0.2 N.D.
carbon source D-Ribose (C) -1.6 -0.2 N.D. +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.3 N.D. -1.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.7 +0.3 N.D. -0.8 N.D.
micoeukaryotes C.elegans, mixed culture-2 +0.4 -0.2 N.D. -1.3 N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -1.4 +0.2 N.D. +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +0.3 N.D. -1.3 N.D.
carbon source L-Fucose (C) -0.8 -0.3 N.D. +0.8 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.4 N.D. -1.0 N.D.
control NoPredeControl +0.6 +0.3 N.D. +1.0 N.D.
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