Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS02695	HSERO_RS02700	HSERO_RS02705	HSERO_RS02710	HSERO_RS02715
carbon source	D-Glucose-6-Phosphate (C)	-0.1	-1.2	-0.0	+0.1	-0.7
carbon source	D-Gluconic Acid (C)	+0.2	-0.7	-0.6	-0.2	-0.7
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.2	-1.5	+0.0	-0.1	-0.1
carbon source	D-Galacturonic Acid (C)	-0.3	-1.2	+0.1	+0.4	-0.7
carbon source	D-Glucose (C)	+0.1	-0.2	-0.2	+0.5	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.3	-0.5	+0.0	-0.7
carbon source	Glycerol (C)	+0.0	-1.5	-0.0	+0.3	-0.3
carbon source	D-Lactate (C)	+0.3	-1.3	+0.1	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	-0.7	-0.1	-0.3	-0.8
carbon source	D-Glucose (C)	+0.4	-0.7	-0.1	-0.3	-0.5
carbon source	L-Proline (C)	-0.3	-0.5	+0.2	+0.4	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	+0.4	-0.8	+0.1	-0.8
r2a control	R2A control	-0.3	-0.9	+0.3	-0.3	+0.1
vitamin	With vitamins t2	+0.2	-1.0	+0.3	+0.3	-1.0
vitamin	No vitamins t2	+0.2	+0.1	-0.1	+0.2	-1.6
vitamin	With vitamins t1	+0.4	-1.0	+0.2	+0.4	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.4	-0.1	-0.1	-1.4
stress	Sisomicin 0.125 mg/ml	-0.8	-0.7	+0.3	+0.7	+0.1
carbon source	D-Ribose (C)	-0.7	-0.3	-0.2	+0.1	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	-0.8	+0.5	+0.2	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.2	+0.4	+0.3	-0.4	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.0	+0.3	+0.3	-0.9
plant	Control soil assay; outgrowth in LB	-0.7	+0.7	-0.2	-0.4	+0.9
supernatant control	Vogels_fungal_media; pH 5.5	+0.3	+0.9	+0.4	-0.2	-0.8
agar plate interaction control	Taped volatile agar plate with no fungus	+0.0	+0.9	+0.2	+0.2	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.5	+0.9	+0.3	-0.2	-0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.4	+1.5	-0.2	-0.1	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	+0.5	+1.6	-0.2	+0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.8	+0.3	+0.4	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.4	+0.8	+0.2	+1.3