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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Herbaspirillum seropedicae SmR1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
HSERO_RS02620 and HSERO_RS02625 are separated by 292 nucleotides
HSERO_RS02625 and HSERO_RS02630 are separated by 266 nucleotides
HSERO_RS02630 and HSERO_RS02635 are separated by 2 nucleotides
HSERO_RS02635 and HSERO_RS02640 are separated by 70 nucleotides
HSERO_RS02620: HSERO_RS02620 - cobalt transporter, at 573,802 to 574,719
_RS02620
HSERO_RS02625: HSERO_RS02625 - hypothetical protein, at 575,012 to 576,406
_RS02625
HSERO_RS02630: HSERO_RS02630 - membrane protein, at 576,673 to 577,254
_RS02630
HSERO_RS02635: HSERO_RS02635 - LysR family transcriptional regulator, at 577,257 to 578,177
_RS02635
HSERO_RS02640: HSERO_RS02640 - dihydrofolate reductase, at 578,248 to 579,201
_RS02640
Group
Condition
HSERO
_RS02620
HSERO
_RS02625
HSERO
_RS02630
HSERO
_RS02635
HSERO
_RS02640
carbon source
L-Rhamnose (C)
-0.9
-0.1
-6.2
-0.2
+0.3
carbon source
D-Glucose (C)
-0.3
-0.1
-5.5
-0.1
+0.2
carbon source
D-Glucose-6-Phosphate (C)
-0.7
+0.0
-3.7
-0.1
-0.2
carbon source
D-Glucose-6-Phosphate (C)
-0.9
-0.4
-3.7
+0.2
-0.0
carbon source
Glycerol (C)
-0.6
-0.5
-3.1
-0.1
+0.0
carbon source
D,L-Lactate (C)
-0.5
+0.2
-3.7
-0.1
-0.1
carbon source
D-Sorbitol (C)
-0.7
-0.2
-3.2
-0.2
+0.1
vitamin
With vitamins t2
-0.0
+0.5
-4.8
+0.1
+0.2
carbon source
L-Fucose (C)
-0.7
-0.3
-2.2
-0.3
+0.1
carbon source
D-Ribose (C)
-0.8
-0.5
-2.3
-0.0
+0.3
carbon source
L-Proline (C)
-0.2
+0.0
-2.5
-0.1
-0.2
carbon source
D,L-Lactate (C)
-0.6
-0.3
-1.9
-0.3
+0.0
nutrient
L-Serine
+0.1
-0.1
-2.9
-0.1
+0.0
carbon source
L-Proline (C)
-0.6
-0.1
-2.1
-0.1
+0.1
carbon source
L-Lactate (C)
-0.7
-0.3
-1.4
-0.3
-0.1
carbon source
L-Rhamnose (C)
-0.5
-0.3
-1.7
+0.1
-0.0
carbon source
Xylitol (C)
-0.6
-0.3
-1.4
-0.4
+0.1
carbon source
D-Gluconic Acid (C)
-0.6
-0.0
-2.0
-0.2
+0.2
carbon source
D-Gluconic Acid (C)
-0.4
+0.0
-1.8
-0.3
+0.0
carbon source
L-Fucose (C)
-0.7
-0.2
-1.9
-0.1
+0.5
carbon source
D-Lactate (C)
-0.8
-0.4
-0.8
-0.6
+0.3
carbon source
D-Glucose (C)
-0.4
+0.5
-2.6
-0.1
+0.3
carbon source
L-Lactate (C)
-0.6
-0.0
-1.5
-0.1
+0.2
vitamin
No vitamins t1
-0.0
-0.2
-1.9
-0.2
+0.2
carbon source
m-Inositol (C)
-0.3
+0.3
-1.9
-0.1
-0.1
carbon source
D-Galacturonic Acid (C)
-0.6
+0.4
-1.5
-0.1
-0.3
carbon source
Glycerol (C)
-0.4
+0.3
-1.5
-0.1
-0.2
vitamin
No vitamins t2
-0.2
+0.2
-2.0
+0.1
+0.0
carbon source
D-Galactose (C)
-0.5
-0.2
-1.5
+0.3
+0.2
carbon source
D-Mannose (C)
-0.5
+0.7
-0.9
-0.1
-0.4
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