Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS02495 and HSERO_RS02500 are separated by 36 nucleotidesHSERO_RS02500 and HSERO_RS02505 are separated by 458 nucleotidesHSERO_RS02505 and HSERO_RS02510 are separated by 552 nucleotidesHSERO_RS02510 and HSERO_RS02515 are separated by 332 nucleotides HSERO_RS02495: HSERO_RS02495 - hypothetical protein, at 546,342 to 547,139 _RS02495 HSERO_RS02500: HSERO_RS02500 - metal-dependent phosphohydrolase, at 547,176 to 550,061 _RS02500 HSERO_RS02505: HSERO_RS02505 - cold-shock protein, at 550,520 to 550,732 _RS02505 HSERO_RS02510: HSERO_RS02510 - transketolase, at 551,285 to 553,279 _RS02510 HSERO_RS02515: HSERO_RS02515 - enzyme with a TIM-barrel fold protein, at 553,612 to 554,424 _RS02515
Group Condition HSERO_RS02495 HSERO_RS02500 HSERO_RS02505 HSERO_RS02510 HSERO_RS02515
stress Sisomicin 0.125 mg/ml -0.4 -0.3 N.D. -0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 -0.2 N.D. -0.1 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.2 N.D. +0.2 -0.8
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.3 N.D. -0.1 -0.6
stress Lomefloxacin 0.012 mM -0.4 -0.1 N.D. -0.2 -0.1
micoeukaryotes C.elegans, mixed culture-2 -0.4 +0.2 N.D. -0.2 -0.4
carbon source D-Lactate (C) +0.1 -0.3 N.D. -0.2 +0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2 -0.2 N.D. +0.4 -0.2
control NoPredeControl -0.2 -0.3 N.D. +0.1 +0.4
supernatant control Vogels_fungal_media; pH 5.5 +0.0 -0.0 N.D. +0.4 -0.5
supernatant control Vogels_fungal_media 0.1X +0.1 +0.0 N.D. +0.4 -0.4
carbon source D-Galacturonic Acid (C) -0.2 +0.0 N.D. -0.2 +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.1 N.D. +0.2 -0.3
carbon source D-Xylose (C) -0.2 -0.3 N.D. -0.1 +0.7
carbon source L-Arabinose (C) -0.0 -0.2 N.D. +0.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.1 N.D. +0.1 +0.3
agar plate interaction control Taped volatile agar plate with no fungus +0.3 +0.0 N.D. +0.6 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 -0.0 N.D. +0.6 -0.4
carbon source D-Ribose (C) +0.1 +0.1 N.D. -0.3 +0.4
stress nitrite 20 mM +0.3 +0.2 N.D. +0.2 -0.3
agar plate interaction control Taped volatile agar plate with no fungus +0.1 -0.1 N.D. +0.4 +0.1
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.1 N.D. +0.3 -0.1
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.2 +0.6 N.D. +0.1 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 +0.2 N.D. -0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.4 N.D. -0.1 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.2 N.D. +0.2 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.3 +0.1 N.D. +0.3 +0.2
carbon source pyruvate (C) +0.2 +0.0 N.D. +0.4 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.2 +0.1 N.D. +0.4 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.2 N.D. +0.4 +0.2
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