Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

500 ntHSERO_RS02445 and HSERO_RS02450 are separated by 45 nucleotidesHSERO_RS02450 and HSERO_RS02455 are separated by 284 nucleotidesHSERO_RS02455 and HSERO_RS02460 are separated by 139 nucleotidesHSERO_RS02460 and HSERO_RS02465 are separated by 41 nucleotides HSERO_RS02445: HSERO_RS02445 - proteinase inhibitor, at 535,140 to 535,436 _RS02445 HSERO_RS02450: HSERO_RS02450 - arsenate reductase, at 535,482 to 535,835 _RS02450 HSERO_RS02455: HSERO_RS02455 - UDP pyrophosphate phosphatase, at 536,120 to 536,974 _RS02455 HSERO_RS02460: HSERO_RS02460 - UDP pyrophosphate phosphatase, at 537,114 to 537,986 _RS02460 HSERO_RS02465: HSERO_RS02465 - ATP-dependent DNA helicase RecQ, at 538,028 to 539,884 _RS02465
Group Condition HSERO_RS02445 HSERO_RS02450 HSERO_RS02455 HSERO_RS02460 HSERO_RS02465
stress Cisplatin 0.003 mg/ml +0.3 -1.4 +0.2 -0.1 -3.2
agar plate interaction control Taped volatile agar plate with no fungus -1.2 -0.5 -0.4 -0.0 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -0.6 -0.8 -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 -1.8 -0.4 +0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.8 -1.1 -0.3 -0.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -0.8 -0.5 -0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 -0.8 -0.2 -0.2 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 -0.6 -0.3 +0.2 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 -1.5 -0.6 +0.1 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 -1.3 -0.3 +0.4 -0.2
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.1 -1.6 -0.0 +0.2 -0.0
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 -1.2 -0.3 +0.3 +0.1
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.1 -1.2 +0.2 +0.2 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -0.3 -0.7 +0.5 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -0.8 -0.5 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 +0.7 -0.1 +0.5 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -0.2 -0.6 +1.3 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 +1.3 -0.3 -0.3 -0.0
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.2 +0.9 +0.2 +0.0 +0.4
stress Lomefloxacin 0.012 mM +0.6 +0.8 +0.2 -0.3 -0.2
carbon source D-Galactose (C) +0.9 +0.7 +0.1 -0.2 -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 +0.9 +0.4 +0.5 +0.2
carbon source L-Proline (C) +0.7 +0.9 +0.4 -0.0 -0.2
carbon source Xylitol (C) +1.1 +1.3 +0.0 -0.4 -0.2
carbon source D-Galactose (C) +0.9 +0.8 +0.2 +0.1 -0.0
carbon source L-Malic (C) +1.0 +0.9 -0.1 +0.2 -0.1
carbon source D-Mannose (C) +1.1 +0.8 +0.2 +0.0 -0.2
carbon source succinate (C) +0.7 +0.9 +0.2 +0.3 -0.0
carbon source L-Fucose (C) +1.1 +0.7 +0.2 +0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +1.0 +5.1 -0.7 -0.2 -0.4
remove
HSERO_RS02445
plot		 remove
HSERO_RS02450
plot		 remove
HSERO_RS02455		 remove
HSERO_RS02460
plot		 remove
HSERO_RS02465
plot