Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS02220 and HSERO_RS02225 are separated by 19 nucleotidesHSERO_RS02225 and HSERO_RS02230 are separated by 42 nucleotidesHSERO_RS02230 and HSERO_RS02235 are separated by 429 nucleotidesHSERO_RS02235 and HSERO_RS02240 are separated by 8 nucleotides HSERO_RS02220: HSERO_RS02220 - xylulokinase, at 484,958 to 486,430 _RS02220 HSERO_RS02225: HSERO_RS02225 - acetyltransferase, at 486,450 to 486,911 _RS02225 HSERO_RS02230: HSERO_RS02230 - methyl-accepting chemotaxis protein, at 486,954 to 488,516 _RS02230 HSERO_RS02235: HSERO_RS02235 - membrane protein, at 488,946 to 489,752 _RS02235 HSERO_RS02240: HSERO_RS02240 - homoserine kinase, at 489,761 to 490,717 _RS02240
Group Condition HSERO_RS02220 HSERO_RS02225 HSERO_RS02230 HSERO_RS02235 HSERO_RS02240
carbon source D-Sorbitol (C) -4.0 -0.2 -0.4 -0.2 N.D.
carbon source D-Mannitol (C) -3.0 +0.0 +0.0 +0.2 N.D.
carbon source D-Mannitol (C) -2.9 +0.3 +0.0 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -0.1 +0.2 -1.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.2 -1.0 -0.2 N.D.
control NoPredeControl -0.0 -0.6 +1.1 -1.6 N.D.
vitamin With vitamins t1 +0.2 -0.1 -0.3 -0.8 N.D.
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.2 -0.2 +0.1 -1.0 N.D.
carbon source succinate (C) +0.3 -0.3 -0.0 -0.8 N.D.
carbon source Xylitol (C) -0.7 -0.6 +0.1 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 -0.4 +0.3 -0.7 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.2 +0.2 +0.3 -1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.4 +0.3 -0.6 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.2 +0.2 -0.7 N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days +0.2 +0.3 -0.5 -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.3 +0.2 -0.5 N.D.
carbon source D-Ribose (C) -0.3 +0.4 +0.3 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 +0.1 +0.4 -0.7 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2 +0.8 -0.1 -0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.6 -0.5 +0.1 +0.2 N.D.
control NoPredeControl +0.4 +0.5 +0.0 -0.6 N.D.
carbon source L-Lactate (C) -0.0 -0.6 +0.1 +1.0 N.D.
carbon source L-Fucose (C) -0.1 -0.2 -0.2 +1.0 N.D.
carbon source D,L-Lactate (C) +0.5 -0.6 +0.0 +0.6 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 +0.4 -0.2 +0.6 N.D.
carbon source Glycerol (C) +0.2 -0.1 -0.0 +1.0 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.1 +0.5 +0.7 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 -0.0 +0.3 +0.8 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +0.3 +0.3 +0.1 N.D.
micoeukaryotes C.elegans, mixed culture-2 +0.1 +0.1 +1.0 +0.7 N.D.
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