Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

Group	Condition	HSERO_RS02140	HSERO_RS02145	HSERO_RS02150	HSERO_RS02155	HSERO_RS02160
carbon source	Xylitol (C)	-2.1	-4.5	-0.2	-0.6	-3.3
supernatant control	Vogels_fungal_media; pH 5.5	-5.0	-1.3	+0.4	+0.1	-4.5
stress	Cisplatin 0.003 mg/ml	+0.6	-5.4	+0.0	+0.2	-4.5
carbon source	m-Inositol (C)	-0.5	-5.6	-0.6	-0.4	-1.9
carbon source	L-Glutamine (C)	-2.1	-4.9	-0.2	-0.3	-1.3
stress	nitrate 200 mM	+0.1	-1.8	-0.5	-0.9	-5.6
carbon source	succinate (C)	+0.0	-4.7	-0.0	-1.0	-2.4
agar plate interaction control	Taped volatile agar plate with no fungus	+0.2	-5.1	+0.1	-0.1	-2.9
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.1	-5.3	+0.1	+0.0	-2.3
carbon source	L-Rhamnose (C)	-2.5	-4.4	+0.0	-0.1	-0.7
stress	Fusidic 0.025 mg/ml	-1.4	-5.4	-0.3	+0.1	-0.5
carbon source	Xylitol (C)	-2.0	-4.1	+0.3	+0.5	-2.1
carbon source	D,L-Lactate (C)	-1.9	-4.6	+0.1	-0.1	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-5.3	+0.0	+0.4	-1.9
carbon source	m-Inositol (C)	+0.2	-4.7	-0.8	+0.1	-2.0
carbon source	L-Glutamine (C)	+0.2	-5.6	+0.1	-0.1	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	-5.2	-0.0	+0.3	-2.7
stress	Thallium(I) acetate 0.001 mg/ml	+0.4	-5.3	-0.2	-0.1	-1.7
carbon source	L-Proline (C)	-1.0	-4.7	+0.1	+0.3	-1.6
carbon source	succinate (C)	+0.7	-4.7	-0.0	+0.4	-2.7
carbon source	Glycerol (C)	+1.0	-5.3	+0.1	+0.3	-2.4
carbon source	D-Ribose (C)	-0.1	-4.2	+0.1	+0.9	-2.9
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.5	-5.3	-0.0	+0.9	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-5.2	-0.0	+0.2	-1.8
carbon source	L-Malic (C)	+0.7	-5.6	-0.1	+0.5	-1.5
stress	Sisomicin 0.125 mg/ml	+0.9	-5.2	-0.0	-0.5	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	-5.2	+0.0	+1.0	-2.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+1.6	-5.2	-0.5	+0.8	-1.9
agar plate interaction control	Taped volatile agar plate with no fungus	+0.8	-5.2	-0.0	+0.8	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.4	-4.8	+0.2	-1.7	+0.4