Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS02060 and HSERO_RS02065 are separated by 111 nucleotidesHSERO_RS02065 and HSERO_RS02070 are separated by 507 nucleotidesHSERO_RS02070 and HSERO_RS02075 overlap by 11 nucleotidesHSERO_RS02075 and HSERO_RS02080 are separated by 70 nucleotides HSERO_RS02060: HSERO_RS02060 - purine biosynthesis protein purH, at 449,132 to 450,703 _RS02060 HSERO_RS02065: HSERO_RS02065 - hypothetical protein, at 450,815 to 451,753 _RS02065 HSERO_RS02070: HSERO_RS02070 - deoxyribodipyrimidine photolyase, at 452,261 to 453,463 _RS02070 HSERO_RS02075: HSERO_RS02075 - hypothetical protein, at 453,453 to 453,866 _RS02075 HSERO_RS02080: HSERO_RS02080 - Holliday junction resolvase, at 453,937 to 454,479 _RS02080
Group Condition HSERO_RS02060 HSERO_RS02065 HSERO_RS02070 HSERO_RS02075 HSERO_RS02080
carbon source D-Glucose-6-Phosphate (C) N.D. -0.3 -0.7 -0.3 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.8 +0.4 -0.5 N.D.
vitamin With vitamins t1 N.D. -0.7 +0.4 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.8 +0.0 +0.5 N.D.
control NoPredeControl N.D. -0.7 +0.4 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.1 -0.5 +1.1 N.D.
agar plate interaction control Taped volatile agar plate with no fungus N.D. +0.3 -0.5 +0.6 N.D.
carbon source L-Proline (C) N.D. +0.5 +0.4 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.6 -0.5 +0.4 N.D.
carbon source L-Arabinose (C) N.D. +0.4 -0.4 +0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. +0.5 -0.4 +0.6 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.3 +0.6 +0.5 N.D.
stress nitrite 20 mM N.D. -0.3 +1.0 +0.1 N.D.
carbon source D-Galacturonic Acid (C) N.D. +0.5 +0.7 -0.2 N.D.
carbon source L-Malic (C) N.D. +0.5 +0.7 -0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.4 +0.2 +1.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.2 +1.0 +0.4 N.D.
stress Lomefloxacin 0.012 mM N.D. +1.1 +0.6 -0.5 N.D.
nitrogen source L-Proline (N) N.D. +0.8 +0.4 +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 +0.7 +0.1 N.D.
carbon source L-Fucose (C) N.D. +0.8 +0.4 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.4 -0.1 +2.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.5 -0.0 +1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.5 +0.5 +0.6 N.D.
stress Fusidic 0.025 mg/ml N.D. +0.7 +0.7 +0.1 N.D.
stress Sisomicin 0.125 mg/ml N.D. +1.5 +0.4 -0.2 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. +0.7 +0.4 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.7 +0.4 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +1.0 +0.3 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.5 +1.1 +0.6 N.D.
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