Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS02010 and HSERO_RS02015 are separated by 103 nucleotidesHSERO_RS02015 and HSERO_RS02020 are separated by 257 nucleotidesHSERO_RS02020 and HSERO_RS02025 are separated by 12 nucleotidesHSERO_RS02025 and HSERO_RS02030 are separated by 86 nucleotides HSERO_RS02010: HSERO_RS02010 - anhydro-N-acetylmuramic acid kinase, at 439,654 to 440,781 _RS02010 HSERO_RS02015: HSERO_RS02015 - peptidase M23, at 440,885 to 442,282 _RS02015 HSERO_RS02020: HSERO_RS02020 - tyrosyl-tRNA synthetase, at 442,540 to 443,790 _RS02020 HSERO_RS02025: HSERO_RS02025 - D-tyrosyl-tRNA(Tyr) deacylase, at 443,803 to 444,276 _RS02025 HSERO_RS02030: HSERO_RS02030 - phospholipid-binding protein, at 444,363 to 445,010 _RS02030
Group Condition HSERO_RS02010 HSERO_RS02015 HSERO_RS02020 HSERO_RS02025 HSERO_RS02030
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -4.8 N.D. +0.3 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 -2.5 N.D. +0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 -1.9 N.D. -0.3 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -1.7 N.D. -0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.9 N.D. +0.1 -0.4
micoeukaryotes Acanthamoeba sp., muxed culture-2 +0.1 -2.2 N.D. -0.2 +0.0
stress nitrate 200 mM -0.1 -2.1 N.D. +0.5 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -1.5 N.D. -0.2 -0.3
control NoPredeControl -0.6 -0.8 N.D. -0.5 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.1 -1.9 N.D. +0.0 +0.3
stress Cobalt chloride 0.2 mM -0.3 -1.8 N.D. +0.5 +0.2
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.3 -0.8 N.D. -0.4 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 -2.0 N.D. +0.3 +0.5
stress A22 0.02 mg/ml -0.6 -0.5 N.D. +0.5 -0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -1.2 N.D. -0.2 +0.7
stress Thallium(I) acetate 0.001 mg/ml -0.8 -0.3 N.D. +0.6 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -1.2 N.D. -0.4 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 -1.0 N.D. +0.0 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -1.7 N.D. +0.4 +0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.2 -1.2 N.D. -0.4 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -2.0 N.D. +1.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 -1.5 N.D. -0.0 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 -2.7 N.D. +0.4 +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -1.2 N.D. +0.2 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -1.0 N.D. -0.0 +0.8
carbon source L-Lactate (C) -0.2 +0.8 N.D. +0.2 -1.0
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 -1.0 N.D. +0.7 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -1.3 N.D. +0.1 +1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 -1.0 N.D. +1.5 +0.2
stress Sisomicin 0.125 mg/ml +0.1 -0.8 N.D. +0.8 +0.7
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