Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS01910 and HSERO_RS01915 are separated by 100 nucleotidesHSERO_RS01915 and HSERO_RS01920 are separated by 3 nucleotidesHSERO_RS01920 and HSERO_RS01925 are separated by 41 nucleotidesHSERO_RS01925 and HSERO_RS01930 are separated by 95 nucleotides HSERO_RS01910: HSERO_RS01910 - sugar kinase, at 420,023 to 420,958 _RS01910 HSERO_RS01915: HSERO_RS01915 - membrane protein, at 421,059 to 422,348 _RS01915 HSERO_RS01920: HSERO_RS01920 - 50S ribosomal protein L11 methyltransferase, at 422,352 to 423,266 _RS01920 HSERO_RS01925: HSERO_RS01925 - acetyl-CoA carboxylase biotin carboxylase subunit, at 423,308 to 424,687 _RS01925 HSERO_RS01930: HSERO_RS01930 - acetyl-CoA carboxylase, at 424,783 to 425,256 _RS01930
Group Condition HSERO_RS01910 HSERO_RS01915 HSERO_RS01920 HSERO_RS01925 HSERO_RS01930
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. -3.1 -1.8 N.D. N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. -2.9 -1.8 N.D. N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days N.D. -2.8 -1.9 N.D. N.D.
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days N.D. -2.5 -2.0 N.D. N.D.
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days N.D. -2.4 -1.6 N.D. N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days N.D. -2.1 -1.6 N.D. N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days N.D. -2.0 -1.3 N.D. N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days N.D. -2.0 -0.9 N.D. N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days N.D. -1.4 -1.0 N.D. N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. -1.2 -0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.0 -0.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.8 -0.8 N.D. N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. -0.8 -0.7 N.D. N.D.
nitrogen source L-Proline (N) N.D. +0.7 +0.6 N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. +1.0 +0.5 N.D. N.D.
carbon source D-Mannose (C) N.D. +0.9 +0.6 N.D. N.D.
carbon source L-Proline (C) N.D. +0.9 +0.7 N.D. N.D.
stress Dimethyl Sulfoxide 5 vol% N.D. +1.0 +0.6 N.D. N.D.
stress Thallium(I) acetate 0.001 mg/ml N.D. +0.9 +0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +1.5 +0.3 N.D. N.D.
carbon source L-Fucose (C) N.D. +1.2 +0.6 N.D. N.D.
carbon source D,L-Lactate (C) N.D. +1.2 +0.6 N.D. N.D.
stress nitrate 200 mM N.D. +0.9 +0.9 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +1.0 +0.9 N.D. N.D.
control NoPredeControl N.D. +1.4 +0.5 N.D. N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. +0.8 +1.3 N.D. N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. +0.7 +1.4 N.D. N.D.
stress Cisplatin 0.003 mg/ml N.D. +1.1 +1.1 N.D. N.D.
carbon source D-Mannose (C) N.D. +1.3 +0.9 N.D. N.D.
micoeukaryotes C.elegans, mixed culture-2 N.D. +1.3 +1.0 N.D. N.D.
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